Hg_chrom5_TN10mRNA_10290
Organism: Heterodera glycines Gene Locus: chr5:6485556-6486705 Feature type: polypeptideProtein Sequence
Length: 100
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.279 | 1.86 | 1.273 | 0.345 | 1.667 | 2.308 | 0.476 | 2.0 | 1.556 | 0.946 | 1.061 | 2.353 | 0.278 | 0.385 | 1.429 | 0.429 | 0.328 | 0.758 | 0.769 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9685
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.937
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.606
|
0.302
|
0.021
|
0.433
|
0.073
|
0.200
|
0.149
|
0.029
|
0.080
|
0.196
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009814
|
1.000
|
1.000
|
Hsc_gene_25262.t1
|
Hsc_gene_25262.t1
|
— |
Q9VFS8.1 26S proteasome non-ATPase regulatory subunit 9 [Drosophila melanogaster]
|
XP_059055693.1 26S proteasome non-ATPase regulatory subunit 9 [Achroia grisella]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070682
|
GO:0005575_0.908|GO:0110165_0.901|GO:0005622_0.836|GO:0008150_0.775|GO:0043226_0.770|GO:0016020_0.763|GO:0043229_0.753|GO:0009987_0.718|GO:0043227_0.699|GO:0043231_0.688|GO:0005634_0.651|GO:0005737_0.593
|
IPR035269+2-96+|IPR040815+8-85+
|
— |
PF18265+8-85+Nas2_N_terminal_domain
|
— |
PTHR12651+2-96+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-100
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
11428.840
|
6.085
|
-1.000
|
35.000
|
6.000
|
57.000
|
43.000
|
18.000
|
17.000
|
43.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1025.634
|
546.903
|
673.208
|
514.784
|
647.631
|
802.801
|
634.443
|
876.202
|
1572.736
|
1546.607
|
1557.805
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.225
|
-0.278
|
0.299
|
0.325
|
-0.328
|
— | — | — |
-1.457
|
— | — | — |
No JSON data available for plots.