SCN Proteipedia

Hg_chrom5_TN10mRNA_10292

Organism: Heterodera glycines Gene Locus: chr5:6498227-6505992 Feature type: polypeptide

Protein Sequence

Length: 1,329

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.989	0.91	0.835	0.986	0.915	1.486	1.084	1.655	1.02	1.241	0.365	1.372	1.588	0.825	1.351	1.075	0.691	0.946	0.81	0.664	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9687	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RGGRGPKKKR	50-70	0.984	—	—	—	—	0.172	—	—	0.181	0.035	0.011	0.257	0.200	0.461	0.348	0.024	0.819	0.203

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009816	1.000	1.000	Hsc_gene_25259.t1	Hsc_gene_25259.t1	—	Q19617.3 Neurexin like receptor 1 [Caenorhabditis elegans]	KAI1708370.1 laminin G domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.903\|GO:0005575_0.866\|GO:0110165_0.860\|GO:0009987_0.835\|GO:0003674_0.754\|GO:0032501_0.735\|GO:0065007_0.694\|GO:0005488_0.628\|GO:0071840_0.627\|GO:0016043_0.624\|GO:0050789_0.622\|GO:0050794_0.596\|GO:0016020_0.591\|GO:0071944_0.587\|GO:0005515_0.572\|GO:0005886_0.564\|GO:0034330_0.546\|GO:0030054_0.516\|GO:0051179_0.513	IPR000742+533-570_536-570_537-567_558-569_956-994_959-994+\|IPR001791+177-346_198-333_199-331_208-332_793-960_794-934_814-936_835-935+\|IPR013320+192-336_558-943_981-1141+\|IPR050372+201-338+	SM00181+536-570_959-994+\|SM00282+198-333_814-936+	PF00008+537-567+EGF-like_domain\|PF02210+208-332_835-935+Laminin_G_domain	—	PTHR15036+201-338+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1329	7qab_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.715	146594.240	6.799	8.000	22.423	12.340	43.868	56.132	12.340	10.083	51.242

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2229.757	4982.031	3489.499	1750.441	708.402	807.313	626.207	1356.493	2295.956	2888.073	2634.309

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.744	-1.646	-0.886	-1.336	—	-0.356	0.646	-0.974	—	—	—	—	—

No JSON data available for plots.

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