Hg_chrom5_TN10mRNA_10293
Organism: Heterodera glycines Gene Locus: chr5:6508083-6526269 Feature type: polypeptideProtein Sequence
Length: 1,926
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.286 | 1.002 | 0.585 | 0.716 | 0.623 | 1.624 | 1.014 | 2.155 | 0.854 | 1.081 | 0.48 | 1.71 | 0.635 | 1.088 | 1.219 | 1.765 | 0.894 | 0.708 | 0.599 | 0.397 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9688
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.876
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRRK,RRKSR,RKFLVAICALRKLKT
|
20-58
|
0.711
|
— | — | — | — |
0.000
|
— | — |
0.107
|
0.141
|
0.016
|
0.097
|
0.229
|
0.307
|
0.247
|
0.005
|
0.733
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004145
|
2.000
|
1.000
|
Hsc_gene_25258.t1
|
Hsc_gene_25257.t1;Hsc_gene_25258.t1
|
— |
P58391.2 Small conductance calcium-activated potassium channel protein 3 [Mus musculus]
|
KAI6221983.1 Small conductance calcium-activated potassium channel protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005516|GO:0006813|GO:0015269|GO:0016020|GO:0016286
|
GO:0005575_0.872|GO:0110165_0.871|GO:0008150_0.861|GO:0009987_0.835|GO:0003674_0.833|GO:0016020_0.828|GO:0071944_0.759|GO:0005886_0.754|GO:0051179_0.748|GO:0051234_0.731|GO:0006810_0.729|GO:0065007_0.675|GO:0055085_0.623|GO:0006811_0.610|GO:0034220_0.604|GO:0050789_0.598|GO:0006812_0.590|GO:0030001_0.590|GO:0005215_0.588|GO:0022803_0.588|GO:0022857_0.588|GO:0098660_0.587|GO:0005216_0.586|GO:0015075_0.586|GO:0015267_0.586|GO:0098655_0.582|GO:0098662_0.575|GO:0005261_0.567|GO:0008324_0.567|GO:0022836_0.562|GO:0006813_0.561|GO:0015318_0.561|GO:0071805_0.561|GO:0022890_0.554|GO:0046873_0.554|GO:0005267_0.542|GO:0015079_0.542|GO:0005622_0.537|GO:0015276_0.534|GO:0022834_0.534|GO:0099094_0.526|GO:0050794_0.523|GO:0005227_0.519|GO:0015269_0.519|GO:0022839_0.519|GO:0005488_0.514
|
IPR004178+1765-1838_1765-1841+|IPR013099+1662-1750+|IPR015449+1363-1906_1466-1576+|IPR036122+1748-1838+
|
SM01053+1765-1841+
|
PF02888+1765-1838+Calmodulin_binding_domain|PF03530+1466-1576+Calcium-activated_SK_potassium_channel|PF07885+1662-1750+Ion_channel
|
G3DSA:1.10.287.70:FF:000183+1483-1749+KCNN_(Potassium_K_ChaNNel,_calcium_activated)-Like
|
PTHR10153+1363-1906+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-357;482-1240;1884-1926
|
2.000
|
358-481;1241-1883
|
9o93_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.959
|
204844.100
|
9.349
|
83.500
|
20.405
|
8.723
|
48.858
|
51.142
|
13.448
|
6.957
|
57.321
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1521.731
|
1717.887
|
1976.782
|
1329.542
|
388.621
|
328.075
|
436.515
|
697.764
|
351.406
|
3815.823
|
2331.073
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.507
|
-0.463
|
-1.805
|
— |
0.423
|
0.989
|
-0.535
|
-3.549
|
— |
-2.772
|
— | — |
No JSON data available for plots.