Hg_chrom5_TN10mRNA_10296
Organism: Heterodera glycines Gene Locus: chr5:6531803-6537435 Feature type: polypeptideProtein Sequence
Length: 746
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.387 | 0.779 | 1.316 | 0.693 | 1.43 | 1.581 | 0.351 | 1.408 | 0.834 | 1.449 | 0.792 | 1.735 | 1.043 | 0.799 | 1.696 | 0.574 | 0.637 | 0.711 | 0.309 | 0.907 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9690
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RHRR,KRYYAQLMMMKKRFP,KRIIDKVDEMRKQRCK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.323
|
0.344
|
0.005
|
0.690
|
0.142
|
0.583
|
0.349
|
0.043
|
0.218
|
0.217
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009819
|
1.000
|
1.000
|
Hsc_gene_25255.t1
|
Hsc_gene_25255.t1
|
— |
Q9H3S7.1 Tyrosine-protein phosphatase non-receptor type 23 [Homo sapiens]
|
KAI3420945.1 Tyrosine-protein phosphatase non-receptor type 23 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0071985
|
GO:0008150_0.862|GO:0005575_0.837|GO:0110165_0.821|GO:0009987_0.817|GO:0005622_0.767|GO:0065007_0.674|GO:0016020_0.648|GO:0005737_0.617|GO:0003674_0.616|GO:0050789_0.602|GO:0043226_0.576|GO:0043229_0.558|GO:0005488_0.556|GO:0071944_0.528|GO:0005515_0.527|GO:0008152_0.527|GO:0005886_0.519|GO:0043227_0.504
|
IPR004328+1-404_8-394_25-389+|IPR025304+493-689+|IPR038499+1-371+|IPR045251+1-734+
|
SM01041+8-394+
|
PF03097+25-389+BRO1-like_domain|PF13949+493-689+ALIX_V-shaped_domain_binding_to_HIV
|
— |
PTHR23030+1-734+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
699-746
|
1.000
|
1-698
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
85498.150
|
6.008
|
-6.500
|
32.172
|
10.054
|
49.598
|
50.402
|
16.354
|
15.818
|
44.236
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1532.578
|
2103.907
|
1424.402
|
1426.129
|
1375.436
|
1599.991
|
1882.759
|
987.493
|
1116.018
|
1817.972
|
1517.134
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.792
|
-0.698
|
0.110
|
— |
0.233
|
0.245
|
-0.802
|
1.074
|
— | — | — | — | — |
No JSON data available for plots.