Hg_chrom5_TN10mRNA_10297
Organism: Heterodera glycines Gene Locus: chr5:6537936-6539320 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 0.889 | 0.984 | 0.879 | 0.955 | 1.143 | 0.531 | 0.955 | 0.778 | 1.463 | 1.158 | 1.311 | 0.885 | 1.531 | 1.56 | 1.638 | 0.47 | 0.772 | 0.0 | 0.094 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9691
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRR
|
51-84
|
0.989
|
65-85
|
0.997
|
— | — |
0.000
|
— | — |
0.435
|
0.172
|
0.114
|
0.645
|
0.150
|
0.111
|
0.255
|
0.182
|
0.185
|
0.212
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004146
|
1.000
|
2.000
|
Hsc_gene_25254.t1;Hsc_gene_25254.t2
|
Hsc_gene_25254.t1;Hsc_gene_25254.t2
|
— | — |
KAI3416313.1 hypothetical protein GPALN_005851 [Globodera pallida]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-66;131-206;313-314
|
2.000
|
67-130;207-312
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.914
|
34427.510
|
10.055
|
16.000
|
28.344
|
5.414
|
50.955
|
49.045
|
17.197
|
11.146
|
52.548
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
86.233
|
126.056
|
120.734
|
86.896
|
54.351
|
57.080
|
85.872
|
60.568
|
130.869
|
57.285
|
88.821
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.293
|
-0.674
|
-0.365
|
-0.708
|
— |
0.598
|
— |
0.647
|
— | — | — | — | — |
No JSON data available for plots.