Hg_chrom5_TN10mRNA_10298
Organism: Heterodera glycines Gene Locus: chr5:6540162-6544552 Feature type: polypeptideProtein Sequence
Length: 627
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 1.929 | 0.58 | 1.1 | 0.904 | 1.881 | 0.911 | 1.515 | 0.673 | 0.862 | 0.483 | 1.876 | 0.753 | 0.981 | 1.335 | 1.23 | 1.15 | 0.87 | 0.491 | 0.797 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9692
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RHRR,HRRRTKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.799
|
0.218
|
0.006
|
0.467
|
0.038
|
0.039
|
0.045
|
0.016
|
0.089
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009820
|
1.000
|
1.000
|
Hsc_gene_25253.t1
|
Hsc_gene_25253.t1
|
— | — |
KAI1714047.1 rel homology dimerization domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003700|GO:0006355
|
GO:0008150_0.960|GO:0009987_0.911|GO:0065007_0.900|GO:0050789_0.894|GO:0005575_0.892|GO:0110165_0.891|GO:0003674_0.885|GO:0050794_0.875|GO:0005488_0.854|GO:0008152_0.808|GO:0043170_0.808|GO:0005622_0.792|GO:0019222_0.791|GO:0031323_0.791|GO:0044237_0.791|GO:0044238_0.790|GO:0060255_0.785|GO:0009058_0.784|GO:0009059_0.782|GO:0010467_0.782|GO:0044249_0.782|GO:0016020_0.780|GO:0080090_0.774|GO:0050896_0.771|GO:0009889_0.770|GO:0031326_0.770|GO:0010468_0.768|GO:0010556_0.768|GO:0006139_0.763|GO:0034654_0.757|GO:0016070_0.754|GO:0043226_0.754|GO:0090304_0.754|GO:0032774_0.749|GO:0141187_0.749|GO:0048518_0.747|GO:0019219_0.746|GO:0097159_0.743|GO:0051252_0.740|GO:0043229_0.736|GO:0048522_0.733|GO:0003676_0.732|GO:0006351_0.732|GO:0006355_0.726|GO:2001141_0.726|GO:0043227_0.706|GO:0009893_0.698|GO:0043231_0.695|GO:0031325_0.694|GO:0003677_0.692|GO:0043565_0.691|GO:0003690_0.688|GO:0009891_0.688|GO:0010604_0.688|GO:1990837_0.688|GO:0005737_0.687|GO:0031328_0.684|GO:0000976_0.682|GO:0001067_0.682|GO:0010557_0.676|GO:0045935_0.666|GO:0051254_0.665|GO:0005634_0.664|GO:0006366_0.656|GO:0006357_0.655|GO:0045893_0.654|GO:1902680_0.654|GO:0032501_0.649|GO:0140110_0.624|GO:0003700_0.612|GO:0045944_0.591|GO:0023052_0.586|GO:0007154_0.584|GO:0051716_0.568|GO:0032502_0.521|GO:0048856_0.521|GO:0007165_0.519
|
IPR002909+457-554+|IPR008366+437-555+|IPR008967+227-345+|IPR013783+452-559+|IPR014756+456-555+|IPR032397+460-554+|IPR037059+221-451+
|
SM00429+457-554+
|
PF16179+460-554+Rel_homology_dimerisation_domain
|
— |
PTHR12533+437-555+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-254;353-435;616-627
|
2.000
|
255-352;436-615
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
69187.170
|
8.166
|
16.500
|
21.372
|
9.091
|
52.632
|
47.368
|
12.759
|
8.612
|
55.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
2323.767
|
53.106
|
412.611
|
243.038
|
267.803
|
440.889
|
279.176
|
1073.508
|
83.637
|
9064.953
|
5215.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.730
|
2.057
|
-0.656
|
— |
0.734
|
-0.649
|
1.180
|
-1.801
|
-6.873
|
— |
-4.545
|
— | — |
No JSON data available for plots.