Hg_chrom5_TN10mRNA_10299
Organism: Heterodera glycines Gene Locus: chr5:6547902-6548952 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 0.578 | 1.581 | 0.643 | 1.242 | 0.956 | 0.518 | 0.932 | 0.552 | 1.511 | 1.318 | 2.923 | 1.035 | 1.194 | 1.141 | 0.444 | 0.815 | 1.412 | 1.433 | 0.913 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9693
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.854
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.560
|
0.243
|
0.014
|
0.513
|
0.214
|
0.147
|
0.120
|
0.020
|
0.129
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009821
|
1.000
|
1.000
|
Hsc_gene_25252.t1
|
Hsc_gene_25252.t1
|
— |
P91416.1 Probable inactive acireductone dioxygenase 1 [Caenorhabditis elegans]
|
KAH7722964.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Aphelenchus avenae]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010309
|
GO:0005575_0.793|GO:0110165_0.787|GO:0005622_0.733|GO:0005737_0.707|GO:0008150_0.642|GO:0009987_0.580|GO:0005829_0.510
|
IPR004313+1-153_3-154+|IPR011051+1-152+|IPR014710+1-160+
|
— |
PF03079+3-154+ARD/ARD'_family
|
— |
PTHR23418+1-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
18720.740
|
5.744
|
-1.500
|
32.298
|
10.559
|
46.584
|
53.416
|
16.149
|
16.149
|
45.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
1311.875
|
296.983
|
176.655
|
4086.278
|
5773.921
|
1839.105
|
262.408
|
555.615
|
67.477
|
817.231
|
495.908
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.976
|
3.646
|
4.639
|
0.467
|
-1.636
|
-2.798
|
-1.840
|
-0.935
|
-3.719
|
6.095
|
2.911
|
— | — |
No JSON data available for plots.