Hg_chrom5_TN10mRNA_10300
Organism: Heterodera glycines Gene Locus: chr5:6549207-6551585 Feature type: polypeptideProtein Sequence
Length: 507
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 1.743 | 1.004 | 0.476 | 1.414 | 1.315 | 0.493 | 1.183 | 1.534 | 1.173 | 1.405 | 1.392 | 1.863 | 0.645 | 0.966 | 0.845 | 0.453 | 0.747 | 0.607 | 0.754 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9694
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-18
|
0.994
|
1.000
|
0.000
|
0.000
|
0.425
|
0.142
|
0.018
|
0.694
|
0.054
|
0.178
|
0.186
|
0.010
|
0.147
|
0.241
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009822
|
1.000
|
1.000
|
Hsc_gene_25251.t1
|
Hsc_gene_25251.t1
|
— | — |
KAI3410987.1 hypothetical protein GPALN_003071 [Globodera pallida]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270|GO:0046872
|
— |
IPR001841+296-344+|IPR011016+295-344+|IPR013083+272-350+|IPR018957+296-343+
|
SM00744+295-344+
|
PF00097+296-343+Zinc_finger,_C3HC4_type_(RING_finger)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
493-507
|
1.000
|
1-492
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.652
|
58685.010
|
7.482
|
6.000
|
30.375
|
12.426
|
51.677
|
48.323
|
16.371
|
14.004
|
42.012
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
156.755
|
1.549
|
11.230
|
212.737
|
89.592
|
15.290
|
14.000
|
3.343
|
441.044
|
224.619
|
317.373
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.634
|
6.972
|
4.340
|
-1.277
|
-2.538
|
— |
-2.311
|
2.218
|
— | — | — | — | — |