Hg_chrom5_TN10mRNA_10301
Organism: Heterodera glycines Gene Locus: chr5:6552570-6553772 Feature type: polypeptideProtein Sequence
Length: 133
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 0.699 | 1.504 | 1.037 | 1.003 | 0.771 | 0.716 | 2.256 | 0.835 | 1.016 | 1.139 | 1.769 | 1.253 | 1.591 | 1.381 | 0.537 | 0.37 | 0.911 | 1.735 | 1.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9695
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.064
|
0.959
|
0.004
|
0.185
|
0.030
|
0.014
|
0.030
|
0.009
|
0.032
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009823
|
1.000
|
1.000
|
Hsc_gene_25250.t1
|
Hsc_gene_25250.t1
|
— | — |
KAI6222159.1 Cytochrome c oxidase subunit Vb [Aphelenchoides besseyi]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005740|GO:0005751|GO:0006123
|
GO:0005575_0.859|GO:0110165_0.849|GO:0016020_0.732|GO:0005622_0.638|GO:0005737_0.600|GO:0043226_0.583|GO:0043229_0.567|GO:0008150_0.551|GO:0043227_0.542|GO:0043231_0.541|GO:0003674_0.516
|
IPR002124+34-131_36-123+|IPR036972+35-128+
|
— |
PF01215+36-123+Cytochrome_c_oxidase_subunit_Vb
|
G3DSA:2.60.11.10:FF:000004+36-128+Cytochrome_c_oxidase_subunit_5B
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-133
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
15568.790
|
7.371
|
3.000
|
33.083
|
16.541
|
45.113
|
54.887
|
18.797
|
14.286
|
45.865
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
2338.114
|
793.457
|
1960.698
|
1966.635
|
2847.392
|
3117.103
|
2528.461
|
4168.993
|
2584.591
|
1772.279
|
2120.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.076
|
1.173
|
0.113
|
0.502
|
— |
-0.290
|
0.313
|
-0.577
|
— | — | — | — | — |
No JSON data available for plots.