Hg_chrom5_TN10mRNA_10302
Organism: Heterodera glycines Gene Locus: chr5:6553936-6556989 Feature type: polypeptideProtein Sequence
Length: 536
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.998 | 0.911 | 1.187 | 1.158 | 1.182 | 1.531 | 0.466 | 1.399 | 0.871 | 1.21 | 0.848 | 1.097 | 1.192 | 0.825 | 1.447 | 0.773 | 0.765 | 1.3 | 0.861 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9696
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— |
PHSKRVK,RKAYDRSRRLRKRQWRLKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.818
|
0.084
|
0.019
|
0.337
|
0.056
|
0.064
|
0.034
|
0.006
|
0.048
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009824
|
1.000
|
1.000
|
Hsc_gene_25249.t1
|
Hsc_gene_25249.t1
|
— |
Q5BLF0.1 60S ribosomal export protein NMD3 [Danio rerio]
|
KAF7637446.1 NMD3 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0043023
|
GO:0005575_0.896|GO:0110165_0.895|GO:0005622_0.840|GO:0008150_0.738|GO:0005737_0.734|GO:0009987_0.693|GO:0003674_0.673|GO:0016020_0.639|GO:0005488_0.634|GO:0043226_0.595|GO:0043229_0.587|GO:0005515_0.583|GO:0071840_0.554|GO:0043227_0.545|GO:0051179_0.540|GO:0006810_0.531|GO:0051234_0.531|GO:0043231_0.524|GO:0051641_0.503|GO:0097159_0.503
|
IPR007064+18-247+|IPR039768+13-526+|IPR048898+314-411+|IPR048899+250-297+
|
— |
PF04981+18-247+NMD3_family|PF21192+314-411+NMD3_OB-fold_domain|PF21193+250-297+NMD3_SH3_domain
|
— |
PTHR12746+13-526+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
436-536
|
1.000
|
1-435
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
60874.430
|
6.756
|
2.500
|
29.104
|
10.261
|
49.067
|
50.933
|
15.485
|
13.619
|
49.254
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
orange
|
1543.045
|
2255.704
|
1269.182
|
1702.292
|
1966.111
|
1655.420
|
2073.991
|
1000.502
|
911.687
|
1595.855
|
1302.640
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.059
|
-0.543
|
0.532
|
0.176
|
-0.233
|
0.336
|
-0.830
|
1.193
|
— | — | — | — | — |
No JSON data available for plots.