Hg_chrom5_TN10mRNA_10304
Organism: Heterodera glycines Gene Locus: chr5:6560197-6565248 Feature type: polypeptideProtein Sequence
Length: 926
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.954 | 1.331 | 1.139 | 0.261 | 0.738 | 1.44 | 0.81 | 1.242 | 0.84 | 1.138 | 0.933 | 1.715 | 2.04 | 0.914 | 0.705 | 1.003 | 0.956 | 0.851 | 0.665 | 1.048 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9698
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_25247
|
— | — |
2-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRKL
|
3-42
|
0.961
|
— | — | — | — |
0.463
|
— | — |
0.086
|
0.128
|
0.102
|
0.243
|
0.340
|
0.338
|
0.368
|
0.041
|
0.317
|
0.664
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009826
|
1.000
|
1.000
|
Hsc_gene_25247.t1
|
Hsc_gene_25247.t1
|
— |
P23687.1 Prolyl endopeptidase [Sus scrofa]
|
KAI1720431.1 prolyl oligopeptidase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508|GO:0008236
|
GO:0008150_0.767|GO:0005575_0.749|GO:0110165_0.749|GO:0003674_0.736|GO:0005622_0.631|GO:0003824_0.612|GO:0005737_0.583|GO:0016020_0.560|GO:0008152_0.555|GO:0016787_0.555|GO:0140096_0.534|GO:0008233_0.525|GO:0043170_0.503
|
IPR001375+700-921+|IPR002470+682-700_709-733_737-756_767-787_822-837_843-865+|IPR002471+744-774+|IPR023302+221-626+|IPR029058+227-916_652-920+|IPR051167+212-925+
|
— |
PF00326+700-921+Prolyl_oligopeptidase_family|PF02897+221-626+Prolyl_oligopeptidase,_N-terminal_beta-propeller_domain
|
G3DSA:3.40.50.1820:FF:000005+625-916+Prolyl_endopeptidase
|
PTHR42881+212-925+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
113-267
|
2.000
|
1-112;268-926
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
103633.110
|
6.615
|
1.500
|
22.786
|
14.255
|
46.976
|
53.024
|
12.095
|
10.691
|
50.972
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
888.629
|
60.995
|
205.598
|
305.482
|
217.682
|
294.789
|
143.588
|
52.584
|
662.909
|
2910.300
|
1947.132
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.523
|
2.188
|
0.680
|
-0.519
|
0.454
|
-1.028
|
-2.596
|
1.594
|
— | — | — | — | — |
No JSON data available for plots.