Hg_chrom5_TN10mRNA_10306
Organism: Heterodera glycines Gene Locus: chr5:6570640-6571788 Feature type: polypeptideProtein Sequence
Length: 211
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.047 | 1.984 | 0.345 | 1.471 | 0.553 | 0.851 | 0.79 | 1.896 | 1.159 | 0.769 | 0.431 | 2.509 | 1.053 | 1.185 | 0.967 | 1.963 | 1.321 | 0.359 | 0.0 | 0.697 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9700
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.500
|
0.204
|
0.015
|
0.647
|
0.055
|
0.027
|
0.048
|
0.035
|
0.092
|
0.174
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009827
|
1.000
|
1.000
|
Hsc_gene_25246.t1
|
Hsc_gene_25246.t1
|
— | — |
KAI1730930.1 CBR-NOS-2 protein [Ditylenchus destructor]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.938|GO:0005575_0.899|GO:0110165_0.899|GO:0050789_0.893|GO:0065007_0.893|GO:0009987_0.879|GO:0050794_0.878|GO:0016020_0.814|GO:0005622_0.813|GO:0032501_0.800|GO:0032502_0.798|GO:0048856_0.798|GO:0007275_0.771|GO:0043226_0.767|GO:0043229_0.767|GO:0048519_0.761|GO:0048731_0.752|GO:0048523_0.748|GO:0016043_0.742|GO:0030154_0.742|GO:0048869_0.742|GO:0071840_0.742|GO:0048468_0.722|GO:0051239_0.720|GO:0007399_0.712|GO:0050793_0.712|GO:0009653_0.710|GO:0040007_0.705|GO:0022008_0.704|GO:0022414_0.704|GO:0048699_0.701|GO:2000026_0.700|GO:0065008_0.699|GO:0005737_0.698|GO:0030182_0.697|GO:0008219_0.696|GO:0003006_0.695|GO:0051128_0.695|GO:0012501_0.693|GO:0051241_0.693|GO:0043067_0.692|GO:0048589_0.692|GO:0009790_0.690|GO:0006915_0.688|GO:0019953_0.688|GO:0042981_0.688|GO:0043069_0.688|GO:0048666_0.688|GO:0051093_0.688|GO:0043066_0.687|GO:0040008_0.685|GO:0044085_0.685|GO:0048870_0.685|GO:0003002_0.684|GO:0007389_0.684|GO:0022607_0.684|GO:0016477_0.683|GO:0030030_0.683|GO:0048609_0.682|GO:0120036_0.682|GO:0031175_0.681|GO:0000902_0.680|GO:0051960_0.680|GO:0007276_0.679|GO:0045926_0.679|GO:0009952_0.678|GO:0035282_0.678|GO:0044087_0.678|GO:0048638_0.678|GO:0022412_0.677|GO:0048232_0.677|GO:0007281_0.676|GO:0007283_0.676|GO:0034330_0.676|GO:0051129_0.676|GO:0007292_0.675|GO:0019827_0.675|GO:0034329_0.675|GO:0048477_0.675|GO:0048640_0.675|GO:0048667_0.675|GO:0048812_0.675|GO:0048858_0.675|GO:0050808_0.675|GO:0051961_0.675|GO:0098727_0.675|GO:0120039_0.675|GO:0007416_0.674|GO:0009798_0.674|GO:0009880_0.674|GO:0050803_0.674|GO:0050807_0.674|GO:1901888_0.674|GO:0007350_0.673|GO:0009948_0.673|GO:0000578_0.670|GO:0007351_0.670|GO:0007528_0.670|GO:0008354_0.670|GO:0008582_0.670|GO:0008595_0.670|GO:0016358_0.670|GO:0030718_0.670|GO:0045886_0.670|GO:0048813_0.670|GO:0051124_0.670|GO:0051963_0.670|GO:0051964_0.670|GO:1901889_0.670|GO:1904396_0.670|GO:1904397_0.670|GO:1905809_0.670|GO:0071944_0.663|GO:0005886_0.643|GO:0043228_0.616|GO:0043232_0.614|GO:0030054_0.573|GO:0098590_0.560|GO:0042995_0.559|GO:0045202_0.558|GO:0099080_0.557|GO:0120025_0.557|GO:0043005_0.552|GO:0035770_0.549|GO:0036464_0.549|GO:0098794_0.545|GO:0031594_0.540|GO:0032838_0.540|GO:0045495_0.540|GO:0071598_0.540|GO:0098975_0.540|GO:0099568_0.540|GO:0120111_0.540
|
IPR024161+16-64+|IPR038129+15-77+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
92-142
|
2.000
|
1-91;143-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
22617.410
|
8.418
|
9.000
|
16.588
|
9.953
|
50.237
|
49.763
|
11.374
|
5.213
|
60.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
cyan
|
244.985
|
78.370
|
97.395
|
100.100
|
382.456
|
532.208
|
880.223
|
310.111
|
0.000
|
178.984
|
102.277
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.903
|
0.490
|
0.736
|
-0.893
|
1.651
|
— |
7.502
|
— | — | — |
No JSON data available for plots.