Hg_chrom5_TN10mRNA_10307
Organism: Heterodera glycines Gene Locus: chr5:6573248-6576364 Feature type: polypeptideProtein Sequence
Length: 650
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.055 | 1.181 | 1.007 | 0.318 | 0.795 | 1.026 | 0.806 | 1.077 | 1.162 | 1.538 | 0.606 | 1.448 | 1.795 | 1.213 | 1.256 | 0.681 | 1.034 | 0.932 | 1.065 | 0.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9701
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRKR
|
3-23
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.059
|
0.083
|
0.038
|
0.290
|
0.326
|
0.314
|
0.414
|
0.035
|
0.309
|
0.856
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009828
|
1.000
|
1.000
|
Hsc_gene_25244.t1
|
Hsc_gene_25244.t1
|
— |
Q04456.1 Gut esterase 1 [Caenorhabditis briggsae]
|
KAI1704353.1 carboxylesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.820|GO:0003674_0.804|GO:0005575_0.778|GO:0110165_0.768|GO:0009987_0.760|GO:0016020_0.663|GO:0003824_0.603|GO:0008152_0.566|GO:0065007_0.544|GO:0016787_0.542|GO:0043226_0.536|GO:0005622_0.532|GO:0016788_0.511
|
IPR002018+74-608+|IPR019826+262-277+|IPR029058+43-631_74-624+|IPR050309+43-593+
|
— |
PF00135+74-608+Carboxylesterase_family
|
— |
PTHR11559+43-593+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-650
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
72195.060
|
7.336
|
6.000
|
22.615
|
11.077
|
42.769
|
57.231
|
12.308
|
10.308
|
50.923
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
red
|
76.911
|
6.636
|
72.580
|
83.713
|
39.127
|
56.276
|
80.900
|
161.957
|
8.223
|
142.374
|
84.881
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.220
|
3.517
|
0.315
|
-1.128
|
0.538
|
0.533
|
1.430
|
-0.865
|
— | — | — | — | — |
No JSON data available for plots.