Hg_chrom5_TN10mRNA_10308
Organism: Heterodera glycines Gene Locus: chr5:6577725-6578994 Feature type: polypeptideProtein Sequence
Length: 170
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.479 | 0.958 | 0.642 | 0.609 | 1.569 | 1.659 | 0.63 | 2.059 | 1.307 | 1.431 | 0.802 | 1.384 | 1.144 | 1.244 | 1.321 | 0.504 | 0.482 | 1.07 | 1.81 | 1.211 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9702
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.057
|
0.958
|
0.008
|
0.149
|
0.039
|
0.026
|
0.091
|
0.012
|
0.028
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009829
|
1.000
|
1.000
|
Hsc_gene_25243.t1
|
Hsc_gene_25243.t1
|
— |
Q18359.1 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 [Caenorhabditis elegans]
|
KAI6181119.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 [Aphelenchoides besseyi]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022904
|
GO:0005575_0.898|GO:0110165_0.814|GO:0005622_0.773|GO:0005737_0.743|GO:0016020_0.725|GO:0043226_0.723|GO:0043229_0.698|GO:0008150_0.697|GO:0043227_0.665|GO:0043231_0.655|GO:0009987_0.640|GO:0032991_0.541
|
IPR006806+49-166_63-129+
|
— |
PF04716+63-129+ETC_complex_I_subunit_conserved_region
|
— |
PTHR12653+49-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
170-170
|
1.000
|
1-169
|
7dkf_N2
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
20031.040
|
6.836
|
1.500
|
28.824
|
14.706
|
45.882
|
54.118
|
15.882
|
12.941
|
38.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
1688.121
|
543.586
|
1208.821
|
1626.086
|
2164.473
|
1832.466
|
1671.285
|
1661.816
|
1280.899
|
2409.155
|
1925.617
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.924
|
1.444
|
0.536
|
0.380
|
-0.225
|
— |
-0.247
|
— | — | — | — | — | — |
No JSON data available for plots.