Hg_chrom5_TN10mRNA_10310
Organism: Heterodera glycines Gene Locus: chr5:6580613-6585771 Feature type: polypeptideProtein Sequence
Length: 825
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.17 | 0.62 | 0.948 | 0.418 | 0.646 | 1.15 | 0.823 | 1.818 | 0.754 | 1.392 | 0.294 | 1.426 | 1.818 | 0.909 | 2.103 | 0.9 | 0.755 | 1.12 | 1.026 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9704
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.907
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
LGEV,RRVHLHSEALRLAEKRRIR,KRRIRADLVATMEEMRARR,RRIRADLVATMEEMRARRK
|
14-54
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.115
|
0.085
|
0.017
|
0.176
|
0.414
|
0.169
|
0.785
|
0.016
|
0.182
|
0.434
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009831
|
1.000
|
1.000
|
Hsc_gene_25241.t1
|
Hsc_gene_25241.t1
|
— |
Q7Z1Z1.1 Chondroitin sulfate synthase sqv-5 [Caenorhabditis elegans]
|
KAF7633085.1 Hexosyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008376|GO:0032580
|
GO:0003674_0.879|GO:0005575_0.851|GO:0110165_0.851|GO:0008150_0.842|GO:0005622_0.704|GO:0016020_0.683|GO:0005737_0.667|GO:0071944_0.657|GO:0009987_0.655|GO:0005886_0.647|GO:0003824_0.610|GO:0043226_0.579|GO:0043229_0.559|GO:0016740_0.551|GO:0008152_0.545|GO:0043227_0.537|GO:0043231_0.527|GO:0044238_0.523|GO:0044237_0.521|GO:0016757_0.519|GO:0016758_0.519|GO:0009058_0.516
|
IPR008428+241-815+|IPR029044+166-285_541-820_549-792+|IPR051227+62-817+
|
— |
PF05679+241-815+Chondroitin_N-acetylgalactosaminyltransferase
|
— |
PTHR12369+62-817+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-825
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
93174.800
|
10.165
|
41.000
|
24.970
|
14.182
|
43.030
|
56.970
|
15.879
|
9.091
|
49.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
830.854
|
1470.638
|
961.696
|
865.617
|
870.643
|
716.490
|
743.440
|
584.537
|
562.054
|
883.545
|
745.763
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.844
|
-0.902
|
— | — |
-0.267
|
— |
-0.396
|
0.487
|
— | — | — | — | — |
No JSON data available for plots.