SCN Proteipedia

Hg_chrom5_TN10mRNA_10312

Organism: Heterodera glycines Gene Locus: chr5:6591096-6595762 Feature type: polypeptide

Protein Sequence

Length: 569

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.206	1.185	0.895	1.394	1.084	1.307	0.711	1.406	1.133	1.092	0.453	1.654	1.757	0.946	1.435	1.18	0.72	0.506	0.406	0.414	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9706	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Not_Clustered	0.729

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	45-65	0.998	—	—	—	—	0.000	—	—	0.831	0.076	0.021	0.426	0.040	0.030	0.038	0.008	0.093	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009833	1.000	1.000	Hsc_gene_25239.t1	Hsc_gene_25239.t1	—	Q965W2.2 Nuclear hormone receptor family member nhr-86 [Caenorhabditis elegans]	KAI6182534.1 Nuclear hormone receptor family member nhr-12 [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.883\|GO:0005575_0.812\|GO:0110165_0.812\|GO:0009987_0.787\|GO:0065007_0.771\|GO:0050789_0.757\|GO:0005622_0.733\|GO:0050794_0.716\|GO:0043226_0.681\|GO:0003674_0.672\|GO:0043229_0.666\|GO:0008152_0.654\|GO:0016020_0.641\|GO:0044237_0.636\|GO:0019222_0.631\|GO:0043170_0.631\|GO:0031323_0.622\|GO:0009058_0.616\|GO:0060255_0.614\|GO:0005488_0.610\|GO:0009059_0.609\|GO:0044249_0.609\|GO:0044238_0.607\|GO:0010467_0.603\|GO:0009889_0.596\|GO:0010556_0.596\|GO:0031326_0.596\|GO:0010468_0.590\|GO:0080090_0.584\|GO:0043227_0.571\|GO:0006139_0.555\|GO:0034654_0.546\|GO:0090304_0.544\|GO:0141187_0.544\|GO:0043231_0.543\|GO:0016070_0.542\|GO:0032774_0.542\|GO:0019219_0.537\|GO:0051252_0.528\|GO:0006351_0.524\|GO:0006355_0.521\|GO:2001141_0.521	IPR000536+297-568_375-551+\|IPR001628+24-96_24-100_26-94_27-43_27-53_43-58_77-85_85-93+\|IPR013088+18-130+\|IPR035500+368-565_375-562+\|IPR049636+27-103+	SM00399+24-96+	PF00104+375-551+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+26-94+Zinc_finger,_C4_type_(two_domains)	—	PTHR46011+25-516+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	99-193	2.000	1-98;194-569	3e00_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.674	63140.430	6.490	0.000	24.253	11.072	47.100	52.900	12.830	11.424	51.318

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	darkturquoise	657.913	275.015	922.882	647.174	352.128	313.699	705.345	1289.129	952.304	474.626	679.345

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.518	1.097	-0.404	-0.911	—	1.179	1.940	-0.731	—	—	—	—	—

No JSON data available for plots.

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