Hg_chrom5_TN10mRNA_10313
Organism: Heterodera glycines Gene Locus: chr5:6603196-6607013 Feature type: polypeptideProtein Sequence
Length: 574
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.155 | 0.851 | 0.57 | 0.541 | 0.436 | 0.759 | 0.747 | 0.697 | 0.929 | 1.978 | 0.317 | 2.152 | 1.936 | 1.139 | 0.853 | 1.145 | 0.942 | 1.425 | 1.474 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9707
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
18-50
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.062
|
0.132
|
0.011
|
0.079
|
0.605
|
0.355
|
0.252
|
0.013
|
0.616
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009834
|
1.000
|
1.000
|
Hsc_gene_25238.t1
|
Hsc_gene_25238.t1
|
— |
Q86YT5.1 Na(+)/citrate cotransporter [Homo sapiens]
|
KAI1712396.1 sodium:sulfate symporter transmembrane region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.940|GO:0009987_0.881|GO:0003674_0.832|GO:0051179_0.808|GO:0006810_0.804|GO:0051234_0.804|GO:0055085_0.767|GO:0005215_0.723|GO:0022857_0.723|GO:0005575_0.655|GO:0110165_0.648|GO:0016020_0.617|GO:0098660_0.604|GO:0006811_0.595|GO:0034220_0.593|GO:0006812_0.579|GO:0015318_0.579|GO:0098662_0.577|GO:0098655_0.575|GO:0030001_0.573|GO:0022804_0.567|GO:0006814_0.566|GO:0071944_0.564|GO:0015291_0.563|GO:0035725_0.562|GO:0015075_0.561|GO:0008324_0.554|GO:0022890_0.550|GO:0015293_0.545|GO:0015294_0.545|GO:0022853_0.545|GO:0046873_0.545|GO:0005886_0.544|GO:0015081_0.544|GO:0015370_0.539|GO:0015711_0.524|GO:0015849_0.509|GO:0046942_0.508|GO:1903825_0.508|GO:1905039_0.508
|
IPR001898+30-560+
|
— |
PF00939+30-560+Sodium:sulfate_symporter_transmembrane_region
|
— |
PTHR10283+27-554+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-574
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
62558.690
|
8.045
|
7.000
|
13.415
|
12.021
|
33.798
|
66.202
|
7.666
|
5.749
|
53.659
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
472.514
|
29.062
|
213.893
|
491.692
|
662.550
|
415.552
|
1096.627
|
1556.144
|
14.849
|
381.541
|
224.387
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.650
|
3.943
|
1.309
|
0.399
|
-0.659
|
1.410
|
1.792
|
— |
-4.796
|
5.241
|
— | — | — |
No JSON data available for plots.