SCN Proteipedia

Hg_chrom5_TN10mRNA_10314

Organism: Heterodera glycines Gene Locus: chr5:6606940-6612327 Feature type: polypeptide

Protein Sequence

Length: 768 (Signal peptide: 1-27)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.636	0.999	1.349	0.314	1.389	1.068	0.651	1.367	1.273	1.284	0.868	1.532	1.157	0.977	1.488	0.856	0.982	0.809	1.202	0.651	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9708	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-Not_Clustered	0.642

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	transmembrane_domain	cell_membrane	nucleus	RRKIEDDQTDDARKMKQ	—	—	—	—	1-27	0.840	0.743	0.000	0.000	0.120	0.069	0.106	0.177	0.244	0.220	0.258	0.040	0.614	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009835	1.000	1.000	Hsc_gene_25236.t1	Hsc_gene_25236.t2;Hsc_gene_25236.t3	—	P16305.3 Gamma-aminobutyric acid receptor subunit alpha-6 [Mus musculus]	KAF7626076.1 Neur_chan_LBD domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.911\|GO:0005575_0.889\|GO:0009987_0.870\|GO:0110165_0.868\|GO:0016020_0.792\|GO:0065007_0.770\|GO:0003674_0.752\|GO:0050789_0.749\|GO:0005886_0.706\|GO:0071944_0.706\|GO:0051179_0.668\|GO:0006810_0.656\|GO:0051234_0.656\|GO:0007154_0.647\|GO:0023052_0.644\|GO:0050896_0.625\|GO:0050794_0.621\|GO:0032501_0.619\|GO:0007267_0.584\|GO:0007268_0.584\|GO:0030054_0.584\|GO:0045202_0.584\|GO:0098916_0.584\|GO:0099536_0.584\|GO:0099537_0.584\|GO:0051716_0.567\|GO:0055085_0.567\|GO:0006811_0.564\|GO:0034220_0.561\|GO:0043226_0.545\|GO:0005215_0.514\|GO:0005216_0.514\|GO:0015075_0.514\|GO:0015267_0.514\|GO:0022803_0.514\|GO:0022857_0.514\|GO:0022836_0.507\|GO:0015276_0.501\|GO:0022834_0.501	IPR006028+628-648_654-675_686-707+\|IPR006201+429-715_467-483_499-510_545-559_619-631+\|IPR006202+427-579+\|IPR018000+545-559+\|IPR036719+628-717+\|IPR036734+420-622_430-624+\|IPR038050+623-755+	—	PF02931+427-579+Neurotransmitter-gated_ion-channel_ligand_binding_domain	—	PTHR18945+429-715+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	64-380	2.000	1-63;381-768	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.545	88166.770	5.662	-10.500	31.510	10.677	51.953	48.047	15.755	15.755	45.964

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	461.845	37.565	270.416	210.147	50.115	69.135	85.992	159.277	1968.567	213.155	965.475

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.618	2.347	-0.255	-2.100	—	—	1.094	-0.745	3.080	—	—	—	—

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