Hg_chrom5_TN10mRNA_10315
Organism: Heterodera glycines Gene Locus: chr5:6612919-6618237 Feature type: polypeptideProtein Sequence
Length: 518
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.257 | 0.988 | 0.316 | 0.799 | 0.45 | 0.891 | 0.85 | 1.062 | 2.402 | 1.409 | 0.351 | 1.817 | 1.931 | 0.52 | 0.906 | 1.324 | 0.601 | 1.082 | 1.485 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9709
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.034
|
0.125
|
0.013
|
0.140
|
0.336
|
0.681
|
0.514
|
0.010
|
0.586
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009836
|
1.000
|
1.000
|
Hsc_gene_25234.t1
|
Hsc_gene_25234.t1;Hsc_gene_25235.t1
|
— |
Q22397.2 Amino acid transporter protein 6 [Caenorhabditis elegans]
|
KAI1720208.1 amino acid permease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.843|GO:0005575_0.824|GO:0110165_0.823|GO:0016020_0.789|GO:0009987_0.762|GO:0071944_0.760|GO:0005886_0.741|GO:0006810_0.735|GO:0051179_0.735|GO:0051234_0.735|GO:0003674_0.692|GO:0055085_0.682|GO:0006865_0.547|GO:0003333_0.546|GO:0005215_0.541|GO:0022857_0.541
|
IPR002293+11-419+|IPR050598+5-454+
|
— |
PF13520+11-419+Amino_acid_permease
|
G3DSA:1.20.1740.10:FF:000058+4-451+Amino_Acid_Transporter
|
PTHR11785+5-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
56765.880
|
9.093
|
17.500
|
13.320
|
13.707
|
33.977
|
66.023
|
8.880
|
4.440
|
49.035
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
2374.030
|
458.815
|
464.378
|
904.886
|
2015.856
|
4743.672
|
1013.399
|
1277.681
|
95.120
|
6235.536
|
3603.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.212
|
0.843
|
1.071
|
1.123
|
1.250
|
-2.219
|
-2.003
|
— |
-6.110
|
— | — | — | — |
No JSON data available for plots.