Hg_chrom5_TN10mRNA_10318
Organism: Heterodera glycines Gene Locus: chr5:6628517-6630690 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 0.558 | 1.059 | 0.59 | 1.142 | 0.702 | 0.978 | 2.74 | 0.913 | 1.388 | 0.519 | 1.813 | 0.666 | 1.12 | 1.747 | 0.44 | 0.898 | 1.245 | 0.527 | 1.007 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9712
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.608
|
0.063
|
0.066
|
0.592
|
0.020
|
0.179
|
0.079
|
0.039
|
0.305
|
0.264
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000808
|
3.000
|
3.000
|
Hsc_gene_18990.t1;Hsc_gene_25229.t1;Hsc_gene_25230.t1
|
Hsc_gene_18990.t1;Hsc_gene_25229.t1;Hsc_gene_25230.t1
|
M03F4.2a;M03F4.2b;T04C12.4;T04C12.5;T04C12.6;T25C8.2
|
P30163.1 Actin-2 [Onchocerca volvulus]
|
AII97886.1 BLTX520 [Nephila pilipes]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.814|GO:0110165_0.812|GO:0008150_0.773|GO:0009987_0.709|GO:0005622_0.697|GO:0043226_0.577|GO:0005737_0.561|GO:0043229_0.540
|
IPR004000+4-227_6-292_8-227_27-36_50-61_62-84_116-129_141-160+|IPR004001+54-64+|IPR020902+105-117+|IPR043129+5-154_147-229+
|
SM00268+6-292+
|
PF00022+4-227+Actin
|
G3DSA:2.30.36.70:FF:000001+35-72+Actin,_alpha_skeletal_muscle|G3DSA:3.30.420.40:FF:000291+2-156+Actin,_alpha_skeletal_muscle|G3DSA:3.90.640.10:FF:000158+182-218+ARP1_actin_related_protein_1_homolog_B
|
PTHR11937+8-227+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
273-292
|
1.000
|
1-272
|
4m63_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
32751.520
|
7.216
|
6.000
|
30.137
|
11.986
|
43.836
|
56.164
|
17.466
|
12.671
|
48.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
40174.499
|
64074.398
|
108272.849
|
15215.444
|
6615.033
|
48908.429
|
2445.318
|
161151.513
|
5809.396
|
18900.265
|
13289.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
-2.212
|
-2.724
|
-1.234
|
2.900
|
-4.311
|
1.618
|
-5.900
|
— |
1.559
|
— | — | — |
No JSON data available for plots.