Hg_chrom5_TN10mRNA_10320
Organism: Heterodera glycines Gene Locus: chr5:6632914-6636056 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.928 | 0.619 | 1.015 | 0.55 | 1.241 | 0.818 | 0.887 | 1.197 | 1.537 | 1.006 | 0.766 | 2.66 | 0.887 | 0.972 | 0.977 | 0.988 | 1.003 | 0.967 | 0.818 | 1.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9714
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.623
|
0.130
|
0.095
|
0.624
|
0.068
|
0.141
|
0.158
|
0.282
|
0.250
|
0.161
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000808
|
3.000
|
3.000
|
Hsc_gene_18990.t1;Hsc_gene_25229.t1;Hsc_gene_25230.t1
|
Hsc_gene_18990.t1;Hsc_gene_25229.t1;Hsc_gene_25230.t1
|
M03F4.2a;M03F4.2b;T04C12.4;T04C12.5;T04C12.6;T25C8.2
|
P30163.1 Actin-2 [Onchocerca volvulus]
|
AAG47837.2 actin 1 [Heterodera glycines];AAN15196.1 actin [Globodera rostochiensis];AAN78299.1 actin 1 [Heterodera glycines];ABR19891.1 beta-actin [Globodera rostochiensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.890|GO:0110165_0.890|GO:0008150_0.778|GO:0005622_0.774|GO:0043226_0.679|GO:0009987_0.665|GO:0005737_0.635|GO:0043229_0.605|GO:0016020_0.554
|
IPR004000+4-376_6-376_8-368_27-36_50-61_62-84_116-129_141-160_237-253+|IPR004001+54-64_357-365+|IPR020902+105-117+|IPR043129+5-154_148-376+
|
SM00268+6-376+
|
PF00022+4-376+Actin
|
G3DSA:2.30.36.70:FF:000001+35-72+Actin,_alpha_skeletal_muscle|G3DSA:3.30.420.40:FF:000058+340-368+Putative_actin-related_protein_5|G3DSA:3.30.420.40:FF:000131+242-338+Actin,_alpha_skeletal_muscle|G3DSA:3.30.420.40:FF:000291+2-151+Actin,_alpha_skeletal_muscle|G3DSA:3.90.640.10:FF:000047+181-272+Actin,_alpha_skeletal_muscle
|
PTHR11937+8-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-376
|
1d4x_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
41834.840
|
5.155
|
-7.500
|
25.266
|
10.904
|
44.149
|
55.851
|
12.234
|
13.032
|
49.734
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
13168.289
|
9604.938
|
25556.827
|
4965.005
|
2883.918
|
18835.683
|
1534.491
|
74231.123
|
883.770
|
5343.944
|
3432.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.184
|
-1.089
|
-2.256
|
-0.816
|
2.721
|
-3.606
|
1.876
|
-5.453
|
-2.706
|
— | — | — | — |
No JSON data available for plots.