Hg_chrom5_TN10mRNA_10323
Organism: Heterodera glycines Gene Locus: chr5:6638858-6642126 Feature type: polypeptideProtein Sequence
Length: 542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 1.03 | 0.57 | 0.954 | 0.492 | 0.473 | 0.901 | 1.107 | 1.845 | 1.346 | 0.419 | 2.171 | 2.358 | 0.639 | 1.017 | 1.081 | 0.817 | 1.258 | 1.135 | 0.868 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9717
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— |
RRRPRTRRH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.091
|
0.095
|
0.016
|
0.197
|
0.218
|
0.545
|
0.295
|
0.016
|
0.434
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009839
|
1.000
|
1.000
|
Hsc_gene_25157.t1
|
Hsc_gene_25157.t1
|
— |
Q22397.2 Amino acid transporter protein 6 [Caenorhabditis elegans]
|
KAI1720208.1 amino acid permease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.856|GO:0005575_0.828|GO:0110165_0.821|GO:0016020_0.790|GO:0009987_0.779|GO:0071944_0.737|GO:0005886_0.730|GO:0006810_0.720|GO:0051179_0.720|GO:0051234_0.720|GO:0003674_0.707|GO:0055085_0.682|GO:0003333_0.543|GO:0006865_0.543|GO:0005215_0.537|GO:0022857_0.537
|
IPR002293+18-446+|IPR050598+17-458+
|
— |
PF13520+18-446+Amino_acid_permease
|
G3DSA:1.20.1740.10:FF:000058+13-458+Amino_Acid_Transporter
|
PTHR11785+17-458+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
510-542
|
1.000
|
1-509
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
60136.680
|
8.524
|
15.000
|
16.052
|
15.129
|
34.871
|
65.129
|
9.963
|
6.089
|
50.369
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
683.932
|
82.648
|
420.521
|
216.506
|
576.399
|
1503.845
|
281.744
|
891.101
|
346.678
|
1242.409
|
858.524
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.117
|
1.252
|
-0.849
|
1.379
|
1.400
|
-2.408
|
-0.861
|
-1.519
|
— | — | — | — | — |
No JSON data available for plots.