SCN Proteipedia

Hg_chrom5_TN10mRNA_10326

Organism: Heterodera glycines Gene Locus: chr5:6652268-6656724 Feature type: polypeptide

Protein Sequence

Length: 631

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.94	1.695	0.893	0.71	0.66	0.813	0.623	1.664	1.69	1.092	0.768	0.839	1.805	0.701	1.1	1.087	0.546	1.033	1.097	1.492	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9720	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.952

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	25-46	0.982	—	—	—	—	0.000	—	—	0.104	0.054	0.012	0.236	0.197	0.461	0.232	0.033	0.788	0.197

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004147	1.000	2.000	Hsc_gene_25161.t1;Hsc_gene_25161.t2	Hsc_gene_25161.t1;Hsc_gene_25161.t2	—	H2KZU7.1 Tyrosine-protein kinase receptor svh-2 [Caenorhabditis elegans]	KAF7636320.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	-0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005524\|GO:0006468	GO:0008150_0.944\|GO:0005575_0.817\|GO:0110165_0.817\|GO:0009987_0.803\|GO:0003674_0.756\|GO:0003824_0.748\|GO:0065007_0.704\|GO:0050896_0.702\|GO:0050789_0.689\|GO:0016740_0.683\|GO:0032501_0.667\|GO:0005622_0.666\|GO:0050794_0.665\|GO:0140096_0.655\|GO:0032502_0.649\|GO:0048856_0.649\|GO:0051716_0.647\|GO:0007154_0.613\|GO:0023052_0.604\|GO:0008152_0.590\|GO:0016020_0.587\|GO:0016772_0.582\|GO:0044237_0.570\|GO:0007165_0.565\|GO:0048518_0.558\|GO:0016301_0.554\|GO:0016773_0.554\|GO:0004672_0.539\|GO:0043170_0.533\|GO:0071944_0.532\|GO:0048522_0.518\|GO:0030154_0.514\|GO:0048869_0.514\|GO:0005737_0.511\|GO:0007275_0.509\|GO:0048468_0.509\|GO:0005886_0.507	IPR000719+350-631+\|IPR001245+353-575_427-440_464-482_514-524+\|IPR008266+470-482+\|IPR011009+343-575+\|IPR020635+350-602+\|IPR050198+247-629+	SM00219+350-602+	PF07714+353-575+Protein_tyrosine_and_serine/threonine_kinase	—	PTHR24418+247-629+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-631	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.825	71880.140	8.676	20.500	22.662	16.323	44.057	55.943	13.788	8.875	48.970

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	greenyellow	983.786	235.985	1235.939	271.578	295.895	547.766	487.618	1028.192	285.796	2551.104	1580.257

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.160	—	-2.078	—	0.902	—	0.798	-0.933	-3.252	—	-2.731	—	—

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