Hg_chrom5_TN10mRNA_10327
Organism: Heterodera glycines Gene Locus: chr5:6656753-6659031 Feature type: polypeptideProtein Sequence
Length: 329
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.025 | 0.919 | 1.105 | 0.943 | 0.608 | 0.935 | 1.049 | 1.064 | 1.148 | 1.479 | 0.414 | 1.252 | 1.351 | 1.111 | 0.992 | 0.651 | 1.296 | 0.691 | 1.87 | 1.252 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9721
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.715
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-23
|
0.988
|
0.668
|
0.000
|
0.000
|
0.274
|
0.240
|
0.092
|
0.473
|
0.311
|
0.354
|
0.357
|
0.011
|
0.411
|
0.816
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009842
|
1.000
|
1.000
|
Hsc_gene_25162.t1
|
Hsc_gene_25162.t1
|
— | — |
KAI1730008.1 lipase (class 2) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016042|GO:0016787
|
GO:0003674_0.885|GO:0003824_0.802|GO:0016787_0.707|GO:0016788_0.667|GO:0052689_0.656|GO:0004806_0.650|GO:0016298_0.650
|
IPR002918+14-327_71-321+|IPR029058+41-316_71-290+
|
— |
PF01674+71-321+Lipase_(class_2)
|
— |
PTHR32015+14-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
36458.590
|
5.589
|
-3.500
|
19.453
|
13.678
|
39.514
|
60.486
|
9.726
|
9.726
|
53.191
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
red
|
253.827
|
131.603
|
364.402
|
81.352
|
517.559
|
1178.346
|
23.621
|
450.668
|
0.000
|
80.159
|
45.805
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.240
|
-0.831
|
-2.054
|
2.637
|
1.203
|
-5.633
|
-1.495
|
-4.113
|
-7.103
|
7.203
|
— | — | — |