Hg_chrom5_TN10mRNA_10328
Organism: Heterodera glycines Gene Locus: chr5:6662621-6665432 Feature type: polypeptideProtein Sequence
Length: 641
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 0.907 | 0.993 | 1.237 | 1.768 | 0.52 | 0.854 | 0.468 | 0.381 | 1.117 | 1.82 | 1.744 | 0.867 | 0.66 | 0.541 | 0.691 | 0.588 | 0.969 | 1.68 | 2.065 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9722
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
scn1018|AY043250.1#X12jg13343.t1
|
scn1018|AY0432501#X12jg13343t1
|
— |
Hsc_gene_25163
|
— |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKRP
|
— | — | — | — |
1-20
|
0.999
|
1.000
|
0.000
|
0.000
|
0.314
|
0.208
|
0.015
|
0.391
|
0.148
|
0.114
|
0.082
|
0.006
|
0.146
|
0.423
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009843
|
1.000
|
1.000
|
Hsc_gene_25163.t1
|
Hsc_gene_25163.t1
|
— | — |
AAM18623.1 C-type lectin domain protein [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.824|GO:0005575_0.793|GO:0110165_0.793|GO:0032501_0.661|GO:0032502_0.656|GO:0048856_0.656|GO:0071944_0.638|GO:0003674_0.616|GO:0005488_0.550
|
IPR001304+26-204_33-161_47-158_338-515_345-473+|IPR016186+16-209_282-521+|IPR016187+13-207_332-518+|IPR050111+22-207+
|
SM00034+26-204_338-515+
|
PF00059+47-158+Lectin_C-type_domain
|
— |
PTHR22803+22-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-641
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
73238.520
|
5.488
|
-6.000
|
31.669
|
13.261
|
46.022
|
53.978
|
15.601
|
16.069
|
46.490
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
89574.265
|
18.224
|
415.655
|
1901.903
|
476775.432
|
336042.466
|
144195.546
|
3177.090
|
2.764
|
30937.967
|
17680.023
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.277
|
6.569
|
2.307
|
7.938
|
-0.489
|
-1.212
|
-6.851
|
5.654
|
-13.740
|
9.730
|
4.183
|
— | — |