Hg_chrom5_TN10mRNA_10336
Organism: Heterodera glycines Gene Locus: chr5:6699327-6705099 Feature type: polypeptideProtein Sequence
Length: 886
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 1.207 | 1.231 | 0.156 | 0.884 | 1.302 | 0.752 | 0.959 | 1.028 | 1.205 | 1.283 | 1.394 | 1.568 | 0.868 | 0.553 | 1.064 | 0.999 | 1.06 | 0.608 | 1.394 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9729
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Gland14|KJ825725.1#tn8jg24545.t1
|
Gland14|KJ8257251#tn8jg24545t1
|
Hsc_gene_25172
|
— | — |
30-pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.983
|
0.999
|
0.000
|
0.000
|
0.197
|
0.264
|
0.195
|
0.408
|
0.370
|
0.364
|
0.310
|
0.078
|
0.269
|
0.470
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002223
|
1.000
|
3.000
|
Hsc_gene_25172.t1;Hsc_gene_25172.t2;Hsc_gene_25172.t3
|
Hsc_gene_25172.t1;Hsc_gene_25172.t2;Hsc_gene_25172.t3
|
— |
Q9QUR6.1 Prolyl endopeptidase [Mus musculus]
|
KAI1720431.1 prolyl oligopeptidase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508|GO:0008236
|
GO:0008150_0.764|GO:0005575_0.762|GO:0110165_0.758|GO:0003674_0.726|GO:0005622_0.656|GO:0003824_0.631|GO:0005737_0.614|GO:0008152_0.566|GO:0016787_0.562|GO:0016020_0.553|GO:0140096_0.541|GO:0008233_0.526|GO:0043170_0.510
|
IPR001375+672-881+|IPR002470+642-660_669-693_697-716_727-747_782-797_803-825+|IPR002471+704-734+|IPR023302+183-586+|IPR029058+187-876_610-874+|IPR051167+166-885+
|
— |
PF00326+672-881+Prolyl_oligopeptidase_family|PF02897+183-586+Prolyl_oligopeptidase,_N-terminal_beta-propeller_domain
|
G3DSA:3.40.50.1820:FF:000005+568-876+Prolyl_endopeptidase
|
PTHR42881+166-885+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-200
|
2.000
|
1-110;201-886
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
99948.390
|
6.564
|
0.500
|
25.169
|
13.093
|
48.984
|
51.016
|
13.093
|
12.077
|
49.436
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
2693.034
|
59.172
|
797.341
|
2655.868
|
1221.322
|
233.955
|
292.959
|
253.552
|
4450.899
|
6376.036
|
5550.977
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.523
|
5.350
|
1.843
|
-1.152
|
-2.369
|
0.336
|
— | — | — | — |
-2.234
|
— | — |