Hg_chrom5_TN10mRNA_10340
Organism: Heterodera glycines Gene Locus: chr5:6714572-6717990 Feature type: polypeptideProtein Sequence
Length: 652
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 1.177 | 1.143 | 0.529 | 1.253 | 1.534 | 0.84 | 1.227 | 1.091 | 1.389 | 0.906 | 0.902 | 0.937 | 0.59 | 1.409 | 1.074 | 0.93 | 0.697 | 1.062 | 0.316 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9733
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.944
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKHWNKNKREKLRRI
|
16-42
|
0.980
|
— | — | — | — |
0.000
|
— | — |
0.625
|
0.182
|
0.009
|
0.544
|
0.117
|
0.064
|
0.141
|
0.021
|
0.065
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009850
|
1.000
|
1.000
|
Hsc_gene_25174.t1
|
Hsc_gene_25174.t1
|
— |
Q3UM18.2 Large subunit GTPase 1 homolog [Mus musculus]
|
KAF7635255.1 CP-type G domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.890|GO:0110165_0.888|GO:0005622_0.823|GO:0008150_0.752|GO:0009987_0.703|GO:0003674_0.668|GO:0016020_0.632|GO:0043226_0.615|GO:0043229_0.595|GO:0005737_0.575|GO:0043227_0.507|GO:0005488_0.501
|
IPR006073+361-415+|IPR027417+168-421_169-417+|IPR030378+170-416+|IPR043358+8-599+
|
— |
PF01926+361-415+50S_ribosome-binding_GTPase
|
— |
PTHR45709+8-599+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77;251-344;610-652
|
2.000
|
78-250;345-609
|
5t62_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
72822.880
|
6.708
|
2.000
|
29.141
|
8.282
|
53.374
|
46.626
|
15.337
|
13.804
|
48.620
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1704.322
|
1806.059
|
1392.299
|
1570.837
|
1649.618
|
1406.632
|
2225.398
|
1234.190
|
1096.907
|
2401.840
|
1842.582
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.606
|
-0.339
|
0.283
|
— |
-0.215
|
0.673
|
-0.293
|
0.994
|
— | — | — | — | — |
No JSON data available for plots.