Hg_chrom5_TN10mRNA_10341
Organism: Heterodera glycines Gene Locus: chr5:6718560-6720912 Feature type: polypeptideProtein Sequence
Length: 294
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 1.187 | 0.866 | 0.352 | 1.134 | 0.872 | 1.296 | 2.211 | 1.587 | 1.103 | 0.979 | 1.2 | 1.512 | 0.916 | 1.319 | 0.777 | 0.613 | 0.876 | 0.785 | 0.4 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9734
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.357
|
0.333
|
0.051
|
0.478
|
0.240
|
0.315
|
0.093
|
0.007
|
0.436
|
0.717
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004149
|
2.000
|
1.000
|
Hsc_gene_25175.t1
|
Hsc_gene_25175.t1
|
— |
O44126.1 32 kDa beta-galactoside-binding lectin [Haemonchus contortus]
|
RCN48112.1 galactoside-binding lectin [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0005575_0.722|GO:0008150_0.711|GO:0110165_0.699|GO:0009987_0.630|GO:0003674_0.543|GO:0016020_0.508
|
IPR001079+25-158_26-156_26-157_27-158_31-157_164-294_165-292_166-294_170-293+|IPR013320+24-158_162-293+|IPR044156+32-291+
|
SM00276+25-158_164-294+|SM00908+31-157_170-293+
|
PF00337+26-157_165-292+Galactoside-binding_lectin
|
G3DSA:2.60.120.200:FF:000124+160-294+Galectin-4
|
PTHR11346+32-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-294
|
8hgj_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
32729.340
|
9.070
|
10.500
|
28.912
|
12.245
|
46.599
|
53.401
|
17.347
|
11.565
|
47.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
667.028
|
2084.565
|
1473.398
|
476.284
|
218.020
|
91.835
|
195.006
|
337.474
|
675.638
|
582.802
|
622.589
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.731
|
-2.267
|
-1.520
|
-1.159
|
-1.233
|
1.096
|
1.772
|
-0.649
|
— | — | — | — | — |
No JSON data available for plots.