Hg_chrom5_TN10mRNA_10342
Organism: Heterodera glycines Gene Locus: chr5:6721289-6723133 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 0.842 | 1.152 | 0.312 | 1.131 | 2.32 | 0.808 | 0.452 | 1.006 | 0.978 | 1.028 | 1.065 | 1.006 | 0.87 | 1.108 | 1.034 | 0.742 | 1.303 | 0.348 | 1.198 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9735
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KKNGPNRMASKAKRRSS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.274
|
0.306
|
0.026
|
0.471
|
0.310
|
0.430
|
0.441
|
0.199
|
0.632
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009851
|
1.000
|
1.000
|
Hsc_gene_25176.t1
|
Hsc_gene_25176.t1
|
— |
O14807.2 Ras-related protein M-Ras [Homo sapiens]
|
KAI1713731.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525|GO:0007165|GO:0016020
|
GO:0008150_0.920|GO:0005575_0.823|GO:0110165_0.822|GO:0009987_0.813|GO:0005622_0.753|GO:0065007_0.741|GO:0050789_0.728|GO:0050794_0.721|GO:0050896_0.699|GO:0003674_0.669|GO:0051716_0.633|GO:0016020_0.577|GO:0007154_0.554|GO:0023052_0.553|GO:0007165_0.525
|
IPR001806+15-220_21-181_22-184+|IPR005225+19-174+|IPR020849+19-200+|IPR027417+14-188_18-183+
|
SM00173+17-184+|SM00174+22-184+|SM00175+20-183+
|
PF00071+21-181+Ras_family
|
G3DSA:3.40.50.300:FF:000080+14-189+Ras-like_GTPase_Ras1
|
PTHR24070+19-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;184-221
|
1.000
|
10-183
|
3kkq_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
24798.930
|
5.868
|
-1.000
|
26.244
|
9.050
|
50.679
|
49.321
|
13.122
|
13.122
|
49.321
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightgreen
|
799.895
|
844.341
|
540.050
|
1559.699
|
1398.778
|
1364.121
|
771.375
|
566.498
|
110.845
|
774.583
|
490.124
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.874
|
0.749
|
1.638
|
-0.189
|
— |
-0.813
|
-1.374
|
0.588
|
-2.949
|
3.999
|
— | — | — |
No JSON data available for plots.