Hg_chrom5_TN10mRNA_10344
Organism: Heterodera glycines Gene Locus: chr5:6730034-6732014 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.111 | 0.667 | 0.695 | 0.879 | 0.849 | 1.143 | 2.578 | 0.318 | 0.708 | 0.775 | 0.531 | 1.311 | 0.354 | 2.511 | 0.845 | 0.591 | 0.783 | 0.772 | 0.49 | 0.468 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9737
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.057
|
0.078
|
0.004
|
0.139
|
0.529
|
0.279
|
0.406
|
0.002
|
0.677
|
0.306
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009853
|
1.000
|
1.000
|
Hsc_gene_25178.t1
|
Hsc_gene_25178.t1;Hsc_gene_25179.t1
|
— |
Q23628.1 Cuticle collagen lon-3 [Caenorhabditis elegans]
|
KAI1728807.1 cuticle collagen lon-3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.921|GO:0032501_0.798|GO:0032502_0.797|GO:0048856_0.797|GO:0005575_0.773|GO:0110165_0.766|GO:0030312_0.676|GO:0071944_0.676|GO:0003674_0.646|GO:0007275_0.510|GO:0031012_0.507|GO:0062023_0.507
|
IPR002486+5-57_9-57+|IPR008160+150-208+|IPR050632+11-287+
|
SM01088+5-57+
|
PF01391+150-208+Collagen_triple_helix_repeat_(20_copies)|PF01484+9-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+11-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
93-314
|
1.000
|
1-92
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
30917.650
|
5.124
|
-3.000
|
17.197
|
4.140
|
33.439
|
66.561
|
8.280
|
8.917
|
67.516
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
177.281
|
665.455
|
13.390
|
19.603
|
109.314
|
857.407
|
13.389
|
277.465
|
12.439
|
32.768
|
24.055
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.857
|
-5.221
|
— |
2.448
|
2.987
|
-5.993
|
-1.746
|
-4.226
|
— | — | — | — | — |
No JSON data available for plots.