Hg_chrom5_TN10mRNA_10355
Organism: Heterodera glycines Gene Locus: chr5:6757409-6761728 Feature type: polypeptideProtein Sequence
Length: 883
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.04 | 0.711 | 1.297 | 0.547 | 1.114 | 1.423 | 0.768 | 1.699 | 0.629 | 1.224 | 0.669 | 0.733 | 1.164 | 1.002 | 1.664 | 1.003 | 1.244 | 0.704 | 0.697 | 0.566 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9747
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RRRKRKN,RRRRRHGTALMGRHRRKYWLKNRASSAKK
|
— | — | — | — |
1-20
|
0.876
|
0.762
|
1.000
|
1.000
|
0.229
|
0.035
|
0.022
|
0.265
|
0.220
|
0.362
|
0.294
|
0.129
|
0.725
|
0.263
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009859
|
1.000
|
1.000
|
Hsc_gene_25193.t1
|
Hsc_gene_25187.t1;Hsc_gene_25187.t3;Hsc_gene_25187.t4
|
— | — |
KAI1701875.1 membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 isoform X1 [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
316-795
|
2.000
|
1-315;796-883
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
98654.050
|
6.728
|
4.000
|
29.785
|
10.419
|
53.001
|
46.999
|
15.968
|
13.817
|
51.642
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
490.730
|
910.113
|
501.070
|
113.174
|
53.353
|
178.245
|
66.261
|
292.199
|
4.146
|
1350.928
|
773.736
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.093
|
-3.144
|
-2.036
|
-1.115
|
1.753
|
-1.418
|
0.602
|
-1.996
|
-6.705
|
5.038
|
-2.697
|
— | — |