Hg_chrom5_TN10mRNA_10358
Organism: Heterodera glycines Gene Locus: chr5:6764807-6765433 Feature type: polypeptideProtein Sequence
Length: 117
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.696 | 0.795 | 0.622 | 0.884 | 1.567 | 1.534 | 1.221 | 0.855 | 1.519 | 1.502 | 0.907 | 1.508 | 0.475 | 0.657 | 1.395 | 0.488 | 1.261 | 0.777 | 1.315 | 0.251 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9749
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.630
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.967
|
0.083
|
0.024
|
0.205
|
0.026
|
0.085
|
0.024
|
0.011
|
0.056
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002225
|
3.000
|
1.000
|
Hsc_gene_25195.t1
|
Hsc_gene_25195.t1
|
— | — |
KIH56524.1 Ctf8 [Ancylostoma duodenale]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007064|GO:0031390
|
GO:0005575_0.909|GO:0110165_0.901|GO:0005622_0.816|GO:0003674_0.811|GO:0043226_0.757|GO:0043229_0.742|GO:0003824_0.676|GO:0016787_0.664|GO:0016462_0.650|GO:0016817_0.650|GO:0016818_0.650|GO:0016887_0.650|GO:0017111_0.650|GO:0140657_0.650|GO:0043228_0.603|GO:0043232_0.603|GO:0005694_0.546|GO:0000785_0.540
|
IPR018607+17-111+
|
— |
PF09696+17-111+Ctf8
|
— |
PTHR28605+5-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-117
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
13005.960
|
7.109
|
1.000
|
27.350
|
5.983
|
47.863
|
52.137
|
14.530
|
12.821
|
45.299
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
149.711
|
41.822
|
18.866
|
109.272
|
101.595
|
52.644
|
74.391
|
27.261
|
12.240
|
486.110
|
283.023
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.373
|
1.250
|
2.637
|
— |
-0.934
|
0.512
|
-1.062
|
1.596
|
-5.490
|
— | — | — | — |
No JSON data available for plots.