Hg_chrom5_TN10mRNA_10359
Organism: Heterodera glycines Gene Locus: chr5:6765665-6768304 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 0.84 | 0.451 | 1.012 | 0.602 | 1.215 | 0.43 | 1.016 | 1.053 | 2.044 | 0.205 | 1.328 | 3.574 | 0.868 | 1.106 | 1.032 | 0.555 | 1.026 | 1.736 | 0.863 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9750
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.875
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
39-76
|
0.943
|
— | — | — | — |
0.000
|
— | — |
0.190
|
0.114
|
0.010
|
0.111
|
0.931
|
0.228
|
0.471
|
0.010
|
0.090
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004151
|
2.000
|
1.000
|
Hsc_gene_25196.t1
|
Hsc_gene_25196.t1
|
— |
Q8K358.4 Phosphatidylinositol glycan anchor biosynthesis class U protein [Mus musculus]
|
KAI1724792.1 GPI transamidase subunit PIG-U domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016255|GO:0042765
|
GO:0005575_0.923|GO:0110165_0.921|GO:0005886_0.908|GO:0016020_0.908|GO:0071944_0.908|GO:0005622_0.778|GO:0005737_0.778|GO:0005773_0.778|GO:0043226_0.778|GO:0043227_0.778|GO:0043229_0.778|GO:0043231_0.778|GO:0008150_0.774|GO:0012505_0.758|GO:0009987_0.733|GO:0005783_0.656|GO:0008152_0.547|GO:0031090_0.539|GO:0044238_0.537|GO:0044237_0.535|GO:0009058_0.531|GO:0019538_0.526|GO:0043170_0.526|GO:0044249_0.518|GO:0009059_0.503
|
IPR009600+36-415+
|
— |
PF06728+42-396+GPI_transamidase_subunit_PIG-U
|
— |
PTHR13121+36-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
51292.360
|
7.889
|
7.500
|
14.898
|
20.090
|
33.860
|
66.140
|
8.804
|
6.095
|
42.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
lightgreen
|
311.954
|
297.601
|
221.709
|
163.094
|
165.618
|
171.788
|
387.923
|
376.223
|
95.927
|
623.869
|
397.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.656
|
-1.005
|
-0.333
|
— | — |
1.184
|
1.026
|
— | — | — | — | — | — |
No JSON data available for plots.