Hg_chrom5_TN10mRNA_10360
Organism: Heterodera glycines Gene Locus: chr5:6768941-6770253 Feature type: polypeptideProtein Sequence
Length: 159
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.097 | 0.439 | 0.686 | 0.217 | 1.468 | 2.58 | 0.898 | 2.516 | 1.398 | 1.7 | 0.572 | 0.74 | 0.175 | 0.605 | 1.412 | 0.898 | 1.031 | 0.667 | 0.484 | 0.185 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9751
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
20-43
|
0.921
|
— | — | — | — |
0.000
|
— | — |
0.535
|
0.436
|
0.044
|
0.502
|
0.124
|
0.165
|
0.088
|
0.024
|
0.162
|
0.440
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004152
|
2.000
|
1.000
|
Hsc_gene_25197.t1
|
Hsc_gene_25197.t1
|
— |
Q92608.2 Dedicator of cytokinesis protein 2 [Homo sapiens]
|
KAK6110428.1 Dock and Zizimin C-2 domain family protein [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0007264
|
GO:0008150_0.930|GO:0009987_0.886|GO:0005575_0.839|GO:0110165_0.835|GO:0005622_0.780|GO:0065007_0.755|GO:0050789_0.749|GO:0050794_0.736|GO:0005737_0.623|GO:0003674_0.611|GO:0005488_0.597|GO:0005515_0.585|GO:0050896_0.577|GO:0016020_0.566|GO:0051716_0.556|GO:0032501_0.545|GO:0071840_0.535|GO:0016043_0.533|GO:0023052_0.529|GO:0043226_0.526|GO:0007154_0.524|GO:0007165_0.512|GO:0043229_0.511
|
IPR026791+2-143+|IPR032376+2-157+|IPR042455+1-53+
|
— |
PF16172+2-157+DOCK_N-terminus
|
— |
PTHR45653+2-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-159
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
17561.820
|
6.697
|
1.000
|
28.302
|
6.918
|
52.830
|
47.170
|
15.723
|
12.579
|
43.396
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
115.186
|
87.033
|
72.966
|
39.205
|
24.647
|
31.100
|
35.269
|
41.689
|
31.365
|
355.947
|
216.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.482
|
-1.287
|
-0.788
|
-0.699
|
— | — | — | — |
-3.642
|
— |
-3.655
|
— | — |
No JSON data available for plots.