Hg_chrom5_TN10mRNA_10365
Organism: Heterodera glycines Gene Locus: chr5:6804425-6807644 Feature type: polypeptideProtein Sequence
Length: 464
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.078 | 0.902 | 1.058 | 0.817 | 0.754 | 0.939 | 0.77 | 1.401 | 1.197 | 1.544 | 0.62 | 0.634 | 1.137 | 0.787 | 1.276 | 1.324 | 0.742 | 1.208 | 0.663 | 0.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9754
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.477
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-30
|
0.990
|
42-63
|
0.997
|
— | — |
0.000
|
— | — |
0.152
|
0.943
|
0.039
|
0.232
|
0.075
|
0.049
|
0.077
|
0.011
|
0.040
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002226
|
3.000
|
1.000
|
Hsc_gene_25201.t1
|
Hsc_gene_25201.t1
|
— |
O01884.2 Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial [Caenorhabditis elegans]
|
KAI1719659.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006744|GO:0016705|GO:0050660|GO:0071949
|
GO:0005575_0.765|GO:0008150_0.725|GO:0009987_0.660|GO:0110165_0.628|GO:0008152_0.589|GO:0044237_0.558|GO:0005622_0.556|GO:0016020_0.549|GO:0009058_0.529|GO:0005737_0.509
|
IPR002938+30-287_336-399+|IPR010971+31-463+|IPR018168+369-382+|IPR036188+29-281_30-459_336-464+|IPR051205+26-463+
|
— |
PF01494+30-287_336-399+FAD_binding_domain
|
— |
PTHR43876+26-463+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-464
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
50755.030
|
7.436
|
6.500
|
23.491
|
9.914
|
44.828
|
55.172
|
13.147
|
10.345
|
53.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
4391.810
|
6464.216
|
6912.171
|
5147.315
|
3836.678
|
4055.576
|
2834.420
|
6689.804
|
2065.581
|
4187.416
|
3278.058
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.133
|
-0.466
|
-0.317
|
-0.456
|
— |
-0.507
|
0.616
|
-1.096
|
— |
1.480
|
— | — | — |
No JSON data available for plots.