Hg_chrom5_TN10mRNA_10366
Organism: Heterodera glycines Gene Locus: chr5:6804582-6807643 Feature type: polypeptideProtein Sequence
Length: 453
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.078 | 0.924 | 1.084 | 0.837 | 0.773 | 0.962 | 0.762 | 1.435 | 1.177 | 1.521 | 0.569 | 0.519 | 1.165 | 0.807 | 1.261 | 1.356 | 0.724 | 1.204 | 0.679 | 0.649 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9754
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.477
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
31-52
|
0.997
|
— | — |
0.201
|
— | — |
0.146
|
0.941
|
0.032
|
0.230
|
0.067
|
0.055
|
0.042
|
0.021
|
0.025
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002226
|
3.000
|
1.000
|
Hsc_gene_25201.t1
|
Hsc_gene_25201.t1
|
— |
O01884.2 Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial [Caenorhabditis elegans]
|
KAI1719659.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006744|GO:0016705|GO:0050660|GO:0071949
|
GO:0005575_0.765|GO:0008150_0.725|GO:0009987_0.660|GO:0110165_0.628|GO:0008152_0.589|GO:0044237_0.559|GO:0005622_0.557|GO:0016020_0.549|GO:0009058_0.529|GO:0005737_0.509
|
IPR002938+19-276_325-388+|IPR010971+20-452+|IPR018168+358-371+|IPR036188+18-270_19-448_325-453+|IPR051205+15-452+
|
— |
PF01494+19-276_325-388+FAD_binding_domain
|
— |
PTHR43876+15-452+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-453
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
49543.460
|
6.940
|
3.500
|
23.400
|
10.155
|
45.033
|
54.967
|
12.804
|
10.596
|
54.084
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
4391.810
|
6464.216
|
6912.171
|
5147.315
|
3836.678
|
4055.576
|
2834.420
|
6689.804
|
2065.581
|
4187.416
|
3278.058
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.133
|
-0.466
|
-0.317
|
-0.456
|
— |
-0.507
|
0.616
|
-1.096
|
— |
1.480
|
— | — | — |
No JSON data available for plots.