Hg_chrom5_TN10mRNA_10369
Organism: Heterodera glycines Gene Locus: chr5:6813899-6817651 Feature type: polypeptideProtein Sequence
Length: 549
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 1.144 | 0.861 | 0.502 | 0.668 | 0.794 | 0.997 | 0.911 | 1.133 | 1.058 | 0.773 | 1.071 | 1.771 | 1.016 | 1.487 | 1.015 | 0.806 | 1.021 | 2.522 | 0.804 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9757
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
19-Not_Clustered
|
0.332
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KERKKRKRNGSKWE
|
— | — | — | — | — |
0.761
|
0.459
|
0.000
|
— |
0.138
|
0.251
|
0.016
|
0.304
|
0.180
|
0.390
|
0.322
|
0.052
|
0.228
|
0.929
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004153
|
1.000
|
2.000
|
Hsc_gene_25204.t1;Hsc_gene_25204.t2
|
Hsc_gene_25204.t1;Hsc_gene_25204.t2
|
— |
G5ECR8.1 Putative glucosylceramidase 3 [Caenorhabditis elegans]
|
KAI1716646.1 glycosyl hydrolase family 30 TIM-barrel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004348|GO:0006665
|
GO:0008150_0.938|GO:0005575_0.886|GO:0110165_0.886|GO:0003674_0.868|GO:0008152_0.794|GO:0044238_0.768|GO:0003824_0.756|GO:0009987_0.746|GO:0043170_0.734|GO:0016020_0.719|GO:0016787_0.691|GO:0005622_0.659|GO:0016798_0.658|GO:0065007_0.657|GO:0009058_0.651|GO:0043226_0.645|GO:0050896_0.645|GO:0050789_0.641|GO:0044237_0.639|GO:0032501_0.638|GO:0005488_0.637|GO:0043229_0.632|GO:0050794_0.628|GO:0005737_0.618|GO:0043227_0.616|GO:0043231_0.616|GO:0051716_0.610|GO:0051179_0.600|GO:0006810_0.596|GO:0051234_0.596|GO:0071840_0.596|GO:0005576_0.593|GO:0016043_0.591|GO:0019538_0.590|GO:0048519_0.590|GO:0005515_0.589|GO:0006950_0.589|GO:0007154_0.587|GO:0044281_0.587|GO:0023052_0.586|GO:0048518_0.586|GO:1901135_0.583|GO:0019222_0.581|GO:0048523_0.580|GO:0007165_0.578|GO:0065008_0.578|GO:0060255_0.575|GO:0080090_0.574|GO:0006629_0.573|GO:0009056_0.573|GO:0055085_0.573|GO:0010646_0.572|GO:0048583_0.572|GO:0023051_0.571|GO:0016740_0.569|GO:0009893_0.567|GO:0009966_0.567|GO:0008610_0.566|GO:0003008_0.565|GO:0044085_0.565|GO:1901615_0.565|GO:0006811_0.564|GO:0044255_0.564|GO:0006996_0.563|GO:0009057_0.563|GO:0009892_0.563|GO:0010604_0.563|GO:0044248_0.563|GO:0010605_0.562|GO:0034220_0.561|GO:0051128_0.561|GO:0051246_0.561|GO:0022607_0.560|GO:0035556_0.560|GO:0070085_0.560|GO:1902531_0.560|GO:0006066_0.559|GO:0009894_0.558|GO:0016042_0.558|GO:0043933_0.558|GO:0030163_0.557|GO:0050877_0.557|GO:0065003_0.557|GO:0008202_0.556|GO:0044242_0.556|GO:0051248_0.556|GO:0006643_0.552|GO:0006664_0.552|GO:0006665_0.552|GO:0006672_0.552|GO:0006677_0.552|GO:0006678_0.552|GO:0006680_0.552|GO:0006687_0.552|GO:0006914_0.552|GO:0007033_0.552|GO:0007040_0.552|GO:0008203_0.552|GO:0016125_0.552|GO:0016236_0.552|GO:0019377_0.552|GO:0030149_0.552|GO:0030258_0.552|GO:0030259_0.552|GO:0031333_0.552|GO:0031929_0.552|GO:0032006_0.552|GO:0042176_0.552|GO:0042391_0.552|GO:0043254_0.552|GO:0043603_0.552|GO:0044087_0.552|GO:0046466_0.552|GO:0046477_0.552|GO:0046479_0.552|GO:0046514_0.552|GO:0051129_0.552|GO:0051247_0.552|GO:0061919_0.552|GO:0080171_0.552|GO:1901136_0.552|GO:1902652_0.552|GO:1903509_0.552|GO:0016757_0.547|GO:0005102_0.546|GO:0016758_0.546|GO:0004553_0.543|GO:0004348_0.536|GO:0008422_0.536|GO:0015926_0.536|GO:0017042_0.536|GO:0046527_0.536|GO:0005773_0.513
|
IPR001139+21-548+|IPR013780+474-549+|IPR017853+141-474+|IPR033452+473-545+|IPR033453+142-470+
|
— |
PF02055+142-470+Glycosyl_hydrolase_family_30_TIM-barrel_domain|PF17189+473-545+Glycosyl_hydrolase_family_30_beta_sandwich_domain
|
— |
PTHR11069+21-548+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-549
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
61801.720
|
10.038
|
25.000
|
22.951
|
14.208
|
42.987
|
57.013
|
14.208
|
8.743
|
51.548
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
330.387
|
55.966
|
18.276
|
48.231
|
18.109
|
10.398
|
75.043
|
8.549
|
1.028
|
1356.706
|
775.701
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.844
|
— |
1.509
|
-1.451
|
-0.782
|
2.859
|
— |
3.277
|
-10.180
|
5.458
|
-5.725
|
— | — |