Hg_chrom5_TN10mRNA_10376
Organism: Heterodera glycines Gene Locus: chr5:6841811-6845817 Feature type: polypeptideProtein Sequence
Length: 1,006
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.844 | 1.225 | 0.886 | 0.137 | 3.28 | 1.147 | 0.485 | 1.59 | 0.972 | 0.833 | 1.401 | 3.742 | 0.331 | 1.013 | 1.177 | 0.369 | 0.782 | 0.542 | 0.382 | 0.292 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9764
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
19B10|AF490249.1#tn8canujg13637.t1
|
19B10|AF4902491#tn8canujg13637t1
|
— | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
nucleus
|
nucleus
|
KRERKEK,KREWAADEMVEKEEKR,KKMLERMEEEAEEKEEKR
|
— | — | — | — |
1-19
|
0.994
|
1.000
|
2.000
|
2.000
|
0.401
|
0.323
|
0.144
|
0.307
|
0.392
|
0.069
|
0.139
|
0.096
|
0.299
|
0.308
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009868
|
1.000
|
1.000
|
Hsc_gene_25216.t1
|
— | — | — |
AAO85457.1 putative gland protein G19B10 [Heterodera glycines]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-82;339-1006
|
1.000
|
83-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.957
|
116896.830
|
4.518
|
-80.000
|
42.744
|
5.865
|
59.841
|
40.159
|
18.191
|
24.553
|
38.072
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
7521.564
|
26.305
|
116.618
|
2725.228
|
1564.785
|
243.919
|
179.568
|
59.179
|
5789.862
|
26721.095
|
17750.566
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.920
|
6.559
|
4.659
|
-0.831
|
-2.667
|
-0.432
|
-2.158
|
1.747
|
— | — |
-3.997
|
— | — |