Hg_chrom5_TN10mRNA_10377
Organism: Heterodera glycines Gene Locus: chr5:6846508-6850684 Feature type: polypeptideProtein Sequence
Length: 655
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.118 | 2.272 | 0.444 | 0.211 | 0.356 | 1.214 | 1.654 | 0.229 | 0.679 | 0.846 | 0.648 | 1.617 | 0.509 | 0.528 | 0.81 | 2.159 | 1.427 | 0.879 | 0.705 | 0.269 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9765
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.744
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRRRR,KRMAQKQNLVERKKAGK
|
59-81
|
0.915
|
47-93
|
0.998
|
— | — |
0.001
|
— | — |
0.087
|
0.143
|
0.032
|
0.096
|
0.135
|
0.110
|
0.176
|
0.031
|
0.342
|
0.755
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002227
|
1.000
|
3.000
|
Hsc_gene_25217.t1;Hsc_gene_25217.t2;Hsc_gene_25217.t3
|
— | — | — |
KAH7684483.1 Protein C15B12.4 [Aphelenchus avenae];KAH7693918.1 Protein C15B12.4 [Aphelenchus avenae]
|
No
|
-0.730
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;64-190;244-363;424-655
|
3.000
|
28-63;191-243;364-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
66110.680
|
10.774
|
25.500
|
13.282
|
4.122
|
51.603
|
48.397
|
8.702
|
4.580
|
68.702
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
832.530
|
113.614
|
1735.067
|
433.015
|
351.800
|
413.268
|
463.659
|
332.271
|
281.805
|
1989.957
|
1257.892
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.704
|
1.793
|
-1.895
|
-0.333
|
— | — | — |
0.623
|
-2.944
|
— |
-2.225
|
— | — |
No JSON data available for plots.