SCN Proteipedia

Hg_chrom5_TN10mRNA_10378

Organism: Heterodera glycines Gene Locus: chr5:6850888-6855094 Feature type: polypeptide

Protein Sequence

Length: 438

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.54	1.168	0.291	0.472	0.609	1.932	0.843	1.598	1.116	1.08	0.588	1.612	0.634	1.361	0.792	1.663	1.011	0.83	0.176	0.269	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9766	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.981

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	22-62	0.996	—	—	0.000	—	—	0.661	0.212	0.031	0.532	0.115	0.039	0.076	0.094	0.056	0.058

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009869	1.000	1.000	Hsc_gene_25218.t1	Hsc_gene_25218.t1	—	P57722.3 Poly(rC)-binding protein 3 [Mus musculus]	KAI1729986.1 KH domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0008150_0.880\|GO:0005575_0.799\|GO:0110165_0.790\|GO:0009987_0.788\|GO:0003674_0.729\|GO:0005622_0.713\|GO:0065007_0.701\|GO:0050789_0.694\|GO:0005488_0.690\|GO:0008152_0.643\|GO:0050794_0.638\|GO:0043170_0.626\|GO:0044238_0.615\|GO:0009058_0.614\|GO:0097159_0.609\|GO:0044237_0.608\|GO:0016020_0.598\|GO:0003676_0.597\|GO:0006139_0.596\|GO:0009059_0.590\|GO:0044249_0.590\|GO:0090304_0.571\|GO:0016070_0.558\|GO:0019222_0.557\|GO:0031323_0.546\|GO:0043226_0.546\|GO:0060255_0.543\|GO:0010467_0.541\|GO:0043229_0.538\|GO:0009889_0.518\|GO:0010556_0.518\|GO:0031326_0.518\|GO:0010468_0.516\|GO:0005737_0.511	IPR004087+97-165_179-250+\|IPR004088+100-161_182-245+\|IPR036612+90-168_96-167_174-252_175-259+	SM00322+97-165_179-250+	PF00013+100-161_182-245+KH_domain	—	PTHR10288+67-369+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-105;416-438	1.000	106-415	2jzx_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.964	45787.920	10.005	18.000	16.210	6.621	46.575	53.425	10.959	5.251	58.676

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	1726.728	1517.086	1040.617	798.383	429.899	879.449	417.689	992.768	613.696	4815.706	3014.845

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.773	-1.063	-0.274	-0.925	1.047	-1.066	—	-1.110	-3.077	—	-3.089	—	—

No JSON data available for plots.

Back to Browser