SCN Proteipedia

Hg_chrom5_TN10mRNA_10381

Organism: Heterodera glycines Gene Locus: chr5:6867753-6869617 Feature type: polypeptide

Protein Sequence

Length: 243

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.574	0.861	0.599	1.135	1.715	3.799	0.637	1.646	0.64	0.945	0.811	2.179	0.114	0.475	1.596	0.764	1.079	0.686	1.583	0.847	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9769	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RRLQEEVQRLTEKQRRE	—	—	—	—	—	—	0.000	—	—	0.777	0.240	0.003	0.535	0.104	0.114	0.113	0.009	0.070	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009872	1.000	1.000	Hsc_gene_25222.t1	Hsc_gene_25222.t1	—	Q8R5C8.2 Zinc finger MYND domain-containing protein 11 [Mus musculus]	KAF7638049.1 MYND-type domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003714\|GO:0034243	GO:0008150_0.959\|GO:0065007_0.957\|GO:0050789_0.956\|GO:0009987_0.945\|GO:0050794_0.945\|GO:0003674_0.903\|GO:0005488_0.903\|GO:0005515_0.868\|GO:0008152_0.854\|GO:0019222_0.854\|GO:0031323_0.846\|GO:0044237_0.846\|GO:0043170_0.843\|GO:0060255_0.843\|GO:0048519_0.839\|GO:0044238_0.834\|GO:0080090_0.834\|GO:0009058_0.823\|GO:0009059_0.823\|GO:0010467_0.823\|GO:0044249_0.823\|GO:0009889_0.819\|GO:0031326_0.818\|GO:0048523_0.816\|GO:0010468_0.807\|GO:0010556_0.807\|GO:0006139_0.787\|GO:0016070_0.787\|GO:0032774_0.787\|GO:0034654_0.787\|GO:0090304_0.787\|GO:0141187_0.787\|GO:0019219_0.779\|GO:0051252_0.779\|GO:2001141_0.774\|GO:0006351_0.772\|GO:0006355_0.764\|GO:0009892_0.743\|GO:0005575_0.739\|GO:0110165_0.736\|GO:0010605_0.734\|GO:0031324_0.734\|GO:0009890_0.720\|GO:0031327_0.720\|GO:0010558_0.714\|GO:0045934_0.712\|GO:0051253_0.712\|GO:0045892_0.709\|GO:1902679_0.709\|GO:0005622_0.693\|GO:0036094_0.672\|GO:0043167_0.671\|GO:0043169_0.665\|GO:0046872_0.663\|GO:0008270_0.660\|GO:0046914_0.660\|GO:0140030_0.660\|GO:0042393_0.659\|GO:0035064_0.654\|GO:0140034_0.654\|GO:0050896_0.630\|GO:0043226_0.621\|GO:0016020_0.614\|GO:0051716_0.613\|GO:0043229_0.600\|GO:0005634_0.543\|GO:0043227_0.543\|GO:0043231_0.543\|GO:0006950_0.508\|GO:0006366_0.504	IPR002893+159-193+\|IPR047269+59-197+	—	PF01753+159-193+MYND_finger	G3DSA:6.10.140.2220:FF:000002+148-197+Protein_kinase_C-binding_protein_1_isoform_C	PTHR46379+59-197+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-58;193-243	1.000	59-192	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.525	28496.830	7.109	3.000	30.041	8.642	60.494	39.506	16.461	13.580	39.506

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	1248.798	843.232	801.829	754.502	866.016	920.025	1770.274	896.848	1402.798	1841.622	1653.554

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.303	-0.297	—	0.167	—	0.956	—	1.124	—	—	—	—	—

No JSON data available for plots.

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