Hg_chrom5_TN10mRNA_10382
Organism: Heterodera glycines Gene Locus: chr5:6870111-6872921 Feature type: polypeptideProtein Sequence
Length: 630
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.181 | 1.01 | 0.602 | 1.72 | 1.791 | 0.283 | 0.873 | 1.27 | 1.48 | 1.227 | 1.494 | 1.014 | 0.763 | 1.652 | 0.726 | 0.598 | 0.673 | 0.366 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9770
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
44-64
|
0.994
|
50-76
|
0.998
|
— | — |
0.000
|
— | — |
0.618
|
0.060
|
0.007
|
0.728
|
0.061
|
0.045
|
0.056
|
0.004
|
0.063
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004157
|
2.000
|
1.000
|
Hsc_gene_18256.t1
|
Hsc_gene_18256.t1
|
— | — |
KAI3410007.1 kinetochore-associated Ndc80 complex subunit ndc80 [Globodera pallida]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0031262|GO:0051315
|
GO:0005575_0.938|GO:0110165_0.929|GO:0005622_0.914|GO:0043226_0.861|GO:0043229_0.840|GO:0008150_0.762|GO:0043228_0.727|GO:0043232_0.727|GO:0009987_0.726|GO:0065007_0.666|GO:0003674_0.665|GO:0005737_0.658|GO:0005488_0.638|GO:0071840_0.628|GO:0016043_0.620|GO:0005515_0.617|GO:0006996_0.569|GO:0005694_0.566|GO:0098687_0.557|GO:0000775_0.555|GO:0007017_0.535|GO:0007010_0.528|GO:0016020_0.521|GO:0000226_0.515|GO:0007049_0.513|GO:0022402_0.513|GO:0048285_0.511|GO:0000280_0.509|GO:0005856_0.506
|
IPR005550+10-623_76-196+|IPR038273+76-196+
|
— |
PF03801+76-196+HEC/Ndc80p_family
|
— |
PTHR10643+10-623+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54;608-630
|
1.000
|
55-607
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
73523.150
|
7.786
|
7.500
|
33.810
|
8.095
|
54.603
|
45.397
|
17.937
|
15.873
|
39.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1054.249
|
409.654
|
545.915
|
1276.556
|
1931.680
|
1748.849
|
2565.887
|
824.839
|
323.380
|
881.036
|
642.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.184
|
1.502
|
1.335
|
0.566
|
— |
0.564
|
-1.198
|
1.784
|
— | — | — | — | — |
No JSON data available for plots.