Hg_chrom5_TN10mRNA_10386
Organism: Heterodera glycines Gene Locus: chr5:6883149-6885991 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 0.475 | 1.41 | 1.689 | 1.02 | 0.942 | 1.166 | 2.245 | 0.635 | 1.048 | 0.557 | 1.2 | 0.794 | 0.314 | 0.916 | 1.341 | 1.004 | 1.175 | 2.512 | 0.36 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9774
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.907
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.560
|
0.190
|
0.007
|
0.588
|
0.111
|
0.407
|
0.110
|
0.103
|
0.086
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004158
|
2.000
|
1.000
|
Hsc_gene_25224.t1
|
Hsc_gene_25224.t1
|
— |
Q9XW12.2 Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Caenorhabditis elegans]
|
KAI1717170.1 RNA polymerase rpb2, domain 6 domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.746|GO:0008150_0.742|GO:0110165_0.719|GO:0005622_0.597|GO:0016020_0.519|GO:0009987_0.517
|
IPR001680+17-53_21-52_26-52_91-131_95-130_149-188_151-187_156-197_194-233_197-232_201-232+|IPR015943+25-244+|IPR036322+20-233+
|
SM00320+17-53_91-131_149-188_194-233+
|
PF00400+26-52_95-130_151-187_197-232+WD_domain,_G-beta_repeat
|
— |
PTHR19920+21-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-245
|
2hes_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
26672.730
|
4.969
|
-8.500
|
26.531
|
11.837
|
47.755
|
52.245
|
12.653
|
13.878
|
57.551
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
46.785
|
51.734
|
47.115
|
25.044
|
20.881
|
24.503
|
131.648
|
50.746
|
34.420
|
46.993
|
41.604
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.366
|
-1.184
|
-0.801
|
— | — |
2.437
|
0.945
|
1.519
|
— | — | — | — | — |
No JSON data available for plots.