Hg_chrom5_TN10mRNA_10387
Organism: Heterodera glycines Gene Locus: chr5:6891400-6892749 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.786 | 1.99 | 0.901 | 1.553 | 1.051 | 1.617 | 0.59 | 2.027 | 0.801 | 1.096 | 0.41 | 1.59 | 1.126 | 0.693 | 1.563 | 0.772 | 1.034 | 0.956 | 0.693 | 0.662 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9775
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.625
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— |
RRFTNENDEERKVRQ
|
— | — | — | — | — | — |
0.001
|
— | — |
0.647
|
0.271
|
0.021
|
0.377
|
0.206
|
0.243
|
0.140
|
0.035
|
0.181
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009873
|
1.000
|
1.000
|
Hsc_gene_25223.t1
|
Hsc_gene_25223.t1
|
— |
Q0IIJ0.1 N-alpha-acetyltransferase 50 [Bos taurus]
|
KAI1724796.1 acetyltransferase (GNAT) family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
GO:0008150_0.704|GO:0003674_0.675|GO:0009987_0.650|GO:0005575_0.610|GO:0110165_0.598|GO:0005622_0.528
|
IPR000182+108-206_115-176+|IPR016181+80-206+|IPR051556+56-203+
|
— |
PF00583+115-176+Acetyltransferase_(GNAT)_family
|
— |
PTHR42919+56-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;216-222
|
1.000
|
4-215
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
25304.450
|
6.928
|
2.500
|
25.676
|
11.261
|
52.252
|
47.748
|
14.414
|
11.261
|
51.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
913.153
|
807.403
|
822.040
|
791.217
|
850.189
|
808.822
|
799.691
|
1053.485
|
813.301
|
1160.252
|
1011.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.205
|
-0.166
|
— | — | — | — |
0.276
|
-0.255
|
— | — | — | — | — |
No JSON data available for plots.