Hg_chrom5_TN10mRNA_10388
Organism: Heterodera glycines Gene Locus: chr5:6892824-6895539 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.08 | 0.609 | 1.255 | 1.56 | 0.992 | 0.916 | 0.879 | 2.024 | 0.635 | 1.351 | 0.577 | 0.98 | 0.661 | 0.504 | 0.923 | 1.224 | 1.054 | 1.299 | 2.564 | 0.28 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9776
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.946
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.590
|
0.228
|
0.011
|
0.549
|
0.127
|
0.328
|
0.218
|
0.239
|
0.125
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004158
|
2.000
|
1.000
|
Hsc_gene_25224.t1
|
Hsc_gene_25224.t1
|
— |
Q9XW12.2 Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Caenorhabditis elegans]
|
KAI1729931.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016226|GO:0097361
|
GO:0005575_0.785|GO:0110165_0.757|GO:0008150_0.700|GO:0005622_0.626|GO:0016020_0.610|GO:0043226_0.540|GO:0043227_0.522|GO:0043229_0.516|GO:0009987_0.513
|
IPR001680+17-53_21-52_26-52_91-131_95-130_149-188_151-187_156-197_194-233_197-232_201-232_238-279_246-279_247-278_296-335+|IPR015943+7-61_75-382+|IPR028608+13-407+|IPR036322+21-402+
|
SM00320+17-53_91-131_149-188_194-233_238-279_296-335+
|
PF00400+26-52_95-130_151-187_197-232_247-278+WD_domain,_G-beta_repeat
|
— |
PTHR19920+21-363+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
45872.760
|
5.249
|
-10.500
|
25.238
|
10.714
|
46.429
|
53.571
|
12.381
|
12.857
|
56.905
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
paleturquoise
|
358.305
|
367.509
|
459.214
|
249.150
|
272.824
|
165.708
|
403.586
|
171.186
|
590.894
|
340.970
|
448.080
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.698
|
-0.774
|
— |
-0.706
|
1.295
|
— |
1.380
|
— | — | — | — | — |
No JSON data available for plots.