Hg_chrom5_TN10mRNA_10391
Organism: Heterodera glycines Gene Locus: chr5:6896434-6902830 Feature type: polypeptideProtein Sequence
Length: 588
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.554 | 1.147 | 0.866 | 0.469 | 0.709 | 1.134 | 0.648 | 1.19 | 1.323 | 0.988 | 0.49 | 2.401 | 1.842 | 1.308 | 1.423 | 1.288 | 0.864 | 0.902 | 1.962 | 1.15 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
FKRR,RPRR
|
— | — | — | — |
1-26
|
0.801
|
0.514
|
4.000
|
4.000
|
0.071
|
0.090
|
0.043
|
0.122
|
0.137
|
0.201
|
0.233
|
0.024
|
0.825
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002228
|
2.000
|
2.000
|
Hsc_gene_25225.t1;Hsc_gene_25225.t2
|
Hsc_gene_25225.t1;Hsc_gene_25225.t2
|
— |
Q21005.2 Acetylcholine-gated chloride channel subunit acc-1 [Caenorhabditis elegans]
|
KAI1696194.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.972|GO:0009987_0.945|GO:0005575_0.907|GO:0110165_0.907|GO:0016020_0.847|GO:0065007_0.845|GO:0050789_0.828|GO:0005886_0.806|GO:0071944_0.806|GO:0051179_0.803|GO:0051234_0.794|GO:0006810_0.793|GO:0003674_0.763|GO:0055085_0.761|GO:0007154_0.753|GO:0023052_0.749|GO:0006811_0.726|GO:0034220_0.715|GO:0050794_0.705|GO:0050896_0.681|GO:0005215_0.658|GO:0022857_0.658|GO:0030054_0.658|GO:0015267_0.653|GO:0022803_0.653|GO:0015075_0.643|GO:0005216_0.642|GO:0051716_0.636|GO:0007267_0.633|GO:0022836_0.620|GO:0032501_0.619|GO:0045202_0.619|GO:0098916_0.613|GO:0099536_0.613|GO:0099537_0.613|GO:0007268_0.611|GO:0098660_0.578|GO:0015276_0.567|GO:0022834_0.567|GO:0007165_0.556|GO:0005230_0.535|GO:0006820_0.531|GO:0006821_0.530|GO:0015698_0.530|GO:0098656_0.521|GO:0015318_0.519|GO:0038023_0.512|GO:0060089_0.512|GO:0098590_0.510|GO:0043226_0.509|GO:0065008_0.507
|
IPR006028+254-274_280-301_314-335_555-575+|IPR006029+259-572+|IPR006201+52-407_89-105_124-135_170-184_245-257+|IPR006202+46-250+|IPR018000+170-184+|IPR036719+251-577+|IPR036734+36-249_44-250+|IPR038050+251-586+
|
— |
PF02931+46-250+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+259-572+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:2.70.170.10:FF:000132+109-247+Uncharacterized_protein
|
PTHR18945+52-407+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
385-539
|
2.000
|
1-384;540-588
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
67873.640
|
8.729
|
14.000
|
21.599
|
15.476
|
45.238
|
54.762
|
12.585
|
9.014
|
48.299
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
528.837
|
1136.350
|
1480.172
|
485.051
|
127.570
|
80.212
|
110.115
|
502.341
|
172.094
|
713.912
|
481.704
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.152
|
-1.365
|
-1.501
|
-1.957
|
-0.655
|
0.467
|
2.544
|
-2.049
|
— | — | — | — | — |