Hg_chrom5_TN10mRNA_10401
Organism: Heterodera glycines Gene Locus: chr5:6953091-6955406 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 1.22 | 1.484 | 0.704 | 0.68 | 0.822 | 1.076 | 1.02 | 0.842 | 1.261 | 0.839 | 2.229 | 1.296 | 1.009 | 1.011 | 0.708 | 0.669 | 1.149 | 0.449 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9788
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.709
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
59-86
|
0.970
|
42-72
|
0.993
|
— | — |
0.000
|
— | — |
0.433
|
0.423
|
0.068
|
0.643
|
0.066
|
0.154
|
0.076
|
0.050
|
0.180
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009877
|
1.000
|
1.000
|
Hsc_gene_25153.t1
|
Hsc_gene_18216.t1;Hsc_gene_25153.t1
|
— |
P34492.4 Putative NipSnap protein K02D10.1 [Caenorhabditis elegans]
|
KAI1720893.1 haloacid dehalogenase-like hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791
|
GO:0003674_0.869|GO:0008150_0.797|GO:0003824_0.724|GO:0005575_0.678|GO:0110165_0.678|GO:0008152_0.648|GO:0009987_0.629|GO:0016787_0.619|GO:0044238_0.557|GO:0005622_0.550|GO:0016788_0.549|GO:0016791_0.536|GO:0042578_0.536|GO:0005737_0.531|GO:0044237_0.524
|
IPR006349+25-315+|IPR006357+6-320_28-133_28-285+|IPR023214+27-313_95-237+|IPR036412+24-315+
|
— |
PF13242+236-312+HAD-hyrolase-like|PF13344+28-133+Haloacid_dehalogenase-like_hydrolase
|
G3DSA:3.40.50.1000:FF:000156+95-237+PhosphoGlycolate_Phosphatase_Homolog
|
PTHR19288+20-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-343
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
37562.880
|
5.914
|
-2.500
|
24.781
|
10.204
|
42.274
|
57.726
|
12.536
|
12.245
|
55.102
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
lightgreen
|
1379.131
|
611.059
|
237.243
|
1126.672
|
1154.087
|
4381.721
|
4248.308
|
1049.265
|
99.208
|
1156.161
|
703.181
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.593
|
0.746
|
2.355
|
— |
1.938
|
— |
-2.175
|
2.163
|
— | — | — | — | — |
No JSON data available for plots.