Hg_chrom5_TN10mRNA_10407
Organism: Heterodera glycines Gene Locus: chr5:6979040-6982197 Feature type: polypeptideProtein Sequence
Length: 485
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 1.486 | 0.9 | 0.924 | 0.722 | 0.793 | 0.982 | 1.34 | 1.054 | 1.393 | 0.656 | 1.213 | 1.718 | 1.071 | 0.884 | 0.913 | 0.744 | 0.812 | 1.745 | 1.213 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-21
|
0.993
|
1.000
|
0.000
|
0.000
|
0.198
|
0.167
|
0.104
|
0.288
|
0.268
|
0.438
|
0.131
|
0.058
|
0.147
|
0.717
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009882
|
1.000
|
1.000
|
Hsc_gene_18222.t1
|
Hsc_gene_18222.t1
|
— |
P52717.1 Serine carboxypeptidase ctsa-1.1 [Caenorhabditis elegans]
|
KAI1728278.1 serine carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004185|GO:0006508
|
GO:0005575_0.817|GO:0110165_0.812|GO:0016020_0.665|GO:0005622_0.582|GO:0008150_0.576|GO:0043226_0.571|GO:0005737_0.570|GO:0043227_0.546|GO:0043229_0.540|GO:0043231_0.523|GO:0003674_0.516
|
IPR001563+37-469_44-481_118-130_131-141_166-191_452-465+|IPR018202+180-187+|IPR029058+33-485_40-483+
|
— |
PF00450+44-481+Serine_carboxypeptidase
|
G3DSA:3.40.50.1820:FF:000335+34-484+Carboxypeptidase
|
PTHR11802+37-469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-485
|
4az3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
54309.950
|
6.931
|
3.500
|
20.619
|
15.258
|
41.031
|
58.969
|
11.340
|
9.278
|
51.546
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1874.956
|
92.397
|
786.093
|
3584.504
|
4919.433
|
2820.710
|
2064.078
|
522.350
|
411.766
|
2348.021
|
1518.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.862
|
5.141
|
2.296
|
0.424
|
-0.787
|
-0.440
|
-2.541
|
2.126
|
-2.612
|
— | — | — | — |