Hg_chrom5_TN10mRNA_10410
Organism: Heterodera glycines Gene Locus: chr5:6992344-6998468 Feature type: polypeptideProtein Sequence
Length: 1,032
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.721 | 0.846 | 0.802 | 0.921 | 1.242 | 0.738 | 0.921 | 0.84 | 0.943 | 0.426 | 0.741 | 0.996 | 1.342 | 1.206 | 1.523 | 2.176 | 0.719 | 0.447 | 0.769 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9797
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — | — | — |
1-34
|
0.776
|
0.925
|
0.000
|
0.000
|
0.213
|
0.141
|
0.084
|
0.250
|
0.140
|
0.141
|
0.200
|
0.065
|
0.547
|
0.732
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004159
|
1.000
|
2.000
|
Hsc_gene_18226.t1;Hsc_gene_18226.t2
|
Hsc_gene_18226.t1;Hsc_gene_18226.t2
|
— |
Q27394.2 Protein let-653 [Caenorhabditis elegans]
|
KAI1713679.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0005575_0.930|GO:0110165_0.924|GO:0009987_0.917|GO:0065007_0.899|GO:0050789_0.883|GO:0003674_0.870|GO:0016020_0.827|GO:0032501_0.821|GO:0032502_0.809|GO:0048856_0.809|GO:0071944_0.800|GO:0048518_0.784|GO:0007275_0.777|GO:0048731_0.766|GO:0005886_0.759|GO:0030154_0.755|GO:0048869_0.755|GO:0048519_0.754|GO:0048468_0.742|GO:0048513_0.731|GO:0051239_0.719|GO:0065008_0.717|GO:0009653_0.715|GO:0050793_0.708|GO:0040007_0.707|GO:0009888_0.704|GO:0048589_0.696|GO:2000026_0.693|GO:0048646_0.691|GO:0051094_0.691|GO:0060429_0.691|GO:0051240_0.690|GO:0009790_0.689|GO:0035295_0.688|GO:0051241_0.688|GO:0030855_0.687|GO:0051093_0.685|GO:0002009_0.684|GO:0035239_0.684|GO:0048729_0.684|GO:0060562_0.684|GO:0009791_0.683|GO:0009887_0.683|GO:0022603_0.682|GO:0040008_0.682|GO:0002064_0.680|GO:0048568_0.680|GO:0003002_0.679|GO:0007389_0.679|GO:0048638_0.678|GO:0048598_0.677|GO:0090066_0.677|GO:0048562_0.675|GO:0002119_0.670|GO:0002164_0.670|GO:0007439_0.670|GO:0035017_0.670|GO:0035148_0.670|GO:0035150_0.670|GO:0035264_0.670|GO:0040014_0.670|GO:0040018_0.670|GO:0040025_0.670|GO:0040026_0.670|GO:0040028_0.670|GO:0042335_0.670|GO:0045927_0.670|GO:0048546_0.670|GO:0048557_0.670|GO:0048565_0.670|GO:0048566_0.670|GO:0048567_0.670|GO:0048580_0.670|GO:0048582_0.670|GO:0048611_0.670|GO:0048613_0.670|GO:0048639_0.670|GO:0055123_0.670|GO:0060605_0.670|GO:0061062_0.670|GO:0061063_0.670|GO:0072175_0.670|GO:1903132_0.670|GO:1903133_0.670|GO:1905276_0.670|GO:1905278_0.670|GO:1905330_0.670|GO:1905332_0.670|GO:0005198_0.650|GO:0042302_0.650|GO:0005576_0.600|GO:0098590_0.592|GO:0005615_0.576|GO:0009986_0.568|GO:0099080_0.563|GO:0099081_0.552|GO:0099512_0.552|GO:0097478_0.547|GO:0098552_0.547|GO:0045177_0.546|GO:0009897_0.540|GO:0009898_0.540|GO:0016324_0.540|GO:0098562_0.540|GO:0098591_0.540|GO:0098592_0.540
|
IPR001507+236-885_236-887+|IPR003609+41-130_42-131_138-226_139-225_151-226+|IPR052774+15-466+
|
SM00241+236-887+|SM00473+41-130_139-225+
|
PF00024+151-226+PAN_domain
|
— |
PTHR47327+15-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
359-771;935-1032
|
2.000
|
1-358;772-934
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
111563.970
|
6.039
|
-5.500
|
20.736
|
8.624
|
52.616
|
47.384
|
10.562
|
10.174
|
60.271
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
magenta
|
307.221
|
207.976
|
174.217
|
243.859
|
699.683
|
870.615
|
351.800
|
283.169
|
86.413
|
217.536
|
161.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.483
|
— |
0.593
|
1.487
|
— |
-1.300
|
-1.732
|
0.456
|
— | — | — | — | — |