Hg_chrom5_TN10mRNA_10411
Organism: Heterodera glycines Gene Locus: chr5:7001377-7012942 Feature type: polypeptideProtein Sequence
Length: 1,532
(Signal peptide: 1-36)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 1.184 | 0.878 | 0.765 | 0.783 | 1.473 | 1.049 | 0.751 | 1.117 | 0.97 | 0.415 | 1.881 | 1.269 | 1.28 | 1.319 | 0.718 | 0.995 | 0.87 | 1.305 | 1.747 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9798
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.918
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RRRK
|
— | — | — | — |
1-36
|
— |
0.853
|
— |
1.000
|
0.140
|
0.030
|
0.021
|
0.324
|
0.165
|
0.429
|
0.262
|
0.038
|
0.867
|
0.197
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009885
|
1.000
|
1.000
|
Hsc_gene_18227.t1
|
Hsc_gene_18227.t1
|
— |
Q0KHY3.2 Protein mesh [Drosophila melanogaster]
|
KAH7729324.1 AMOP domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007160
|
GO:0008150_0.965|GO:0009987_0.910|GO:0005575_0.909|GO:0110165_0.903|GO:0003674_0.742|GO:0065007_0.670|GO:0030054_0.653|GO:0032501_0.645|GO:0050789_0.644|GO:0005488_0.621|GO:0051179_0.602|GO:0006810_0.590|GO:0051234_0.590|GO:0005515_0.575|GO:0005911_0.566|GO:0070161_0.566|GO:0048519_0.551|GO:0043296_0.540|GO:0051239_0.530|GO:0003008_0.524|GO:0032879_0.524|GO:0007155_0.517|GO:0051049_0.517|GO:0044057_0.508|GO:0098609_0.508|GO:0051241_0.507|GO:0046903_0.505|GO:0048511_0.503|GO:0051051_0.503|GO:0051046_0.502
|
IPR000436+1318-1391+|IPR003886+228-391_230-393_245-389+|IPR005533+683-903_688-770_821-899+|IPR051495+686-1430+
|
SM00539+230-393+|SM00723+683-903+
|
PF03782+688-770_821-899+AMOP_domain|PF06119+245-389+Nidogen-like
|
— |
PTHR13802+686-1430+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1437-1532
|
1.000
|
1-1436
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
172927.060
|
6.948
|
6.500
|
20.235
|
13.708
|
42.167
|
57.833
|
10.705
|
9.530
|
51.240
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
2728.548
|
3552.225
|
1423.582
|
671.740
|
496.574
|
5684.182
|
2221.956
|
8417.507
|
504.507
|
3133.606
|
2006.850
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.547
|
-2.540
|
-0.976
|
-0.468
|
3.531
|
-1.345
|
0.468
|
-1.782
|
-2.771
|
— |
-2.409
|
— | — |